update formatting throughout codebase (#475)

ihmeuw · Aug 28, 2024 · a773962 · a773962
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diff --git a/docs/source/concepts/model_specification/index.rst b/docs/source/concepts/model_specification/index.rst
@@ -76,9 +76,11 @@ specification item and the fully instantiated object is the domain of the
 
 The :class:`ComponentConfigurationParser
 <vivarium.framework.components.parser.ComponentConfigurationParser>`
-is responsible for taking a list or hierarchical :class:`LayeredConfigTree
-<layered_config_tree.main.LayeredConfigTree>` of components derived from a model
-specification file and turning it into a list of instantiated component objects.
+is responsible for taking a list or hierarchical 
+:class:`LayeredConfigTree <layered_config_tree.main.LayeredConfigTree>` of 
+components derived from a model specification file and turning it into a list of 
+instantiated component objects. 
+
 The :meth:`get_components
 <vivarium.framework.components.parser.ComponentConfigurationParser.get_components>`
 method of the parser is used anytime a simulation is initialized from a

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -50,6 +50,7 @@
 # ones.
 extensions = [
     "sphinx.ext.autodoc",
+    "sphinx_autodoc_typehints",
     "sphinx.ext.intersphinx",
     "sphinx.ext.doctest",
     "sphinx.ext.todo",

diff --git a/setup.py b/setup.py
@@ -69,6 +69,7 @@
         "IPython",
         "matplotlib",
         "sphinxcontrib-video",
+        "sphinx-autodoc-typehints",
     ]
 
     setup(