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  1. happ happ Public

    Workflow to run and evaluate clustering of ASV sequences into OTUs

    Python 1

  2. coidb coidb Public

    Forked from biodiversitydata-se/coidb

    A small python package for downloading and processing metabarcoding references

    Python

  3. utils-clean_asv_data utils-clean_asv_data Public

    Code to clean up ASV clustering results and generate stats

    Python

  4. ASV-taxonomy ASV-taxonomy Public

    Python

  5. amplicon-multi-cutadapt amplicon-multi-cutadapt Public

    Forked from biodiversitydata-se/amplicon-multi-cutadapt

    Preprocessing of amplicon sequencing reads via a 4-step cutadapt workflow

    Python

  6. paper-lep-efficiency paper-lep-efficiency Public

    Repository with data and code for the ms on evaluating IBA efficiency using Swedish Lepidoptera

    HTML

Repositories

Showing 8 of 8 repositories
  • paper-metagenomics Public

    Data and code for matching metagenomic and metabarcoding results, used in Lopez-Clinton et al ms.

    insect-biome-atlas/paper-metagenomics’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Nov 15, 2024
  • amplicon-multi-cutadapt Public Forked from biodiversitydata-se/amplicon-multi-cutadapt

    Preprocessing of amplicon sequencing reads via a 4-step cutadapt workflow

    insect-biome-atlas/amplicon-multi-cutadapt’s past year of commit activity
    Python 0 1 0 0 Updated Nov 12, 2024
  • happ Public

    Workflow to run and evaluate clustering of ASV sequences into OTUs

    insect-biome-atlas/happ’s past year of commit activity
    Python 1 0 1 0 Updated Nov 11, 2024
  • utils Public

    R scripts useful for working with the IBA data

    insect-biome-atlas/utils’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 28, 2024
  • insect-biome-atlas/ASV-taxonomy’s past year of commit activity
    Python 0 0 0 0 Updated Aug 14, 2024
  • paper-lep-efficiency Public

    Repository with data and code for the ms on evaluating IBA efficiency using Swedish Lepidoptera

    insect-biome-atlas/paper-lep-efficiency’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jul 17, 2024
  • coidb Public Forked from biodiversitydata-se/coidb

    A small python package for downloading and processing metabarcoding references

    insect-biome-atlas/coidb’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 11, 2024
  • utils-clean_asv_data Public

    Code to clean up ASV clustering results and generate stats

    insect-biome-atlas/utils-clean_asv_data’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Feb 21, 2024

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