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use micromamba in CI #500

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merged 3 commits into from
Aug 10, 2022
Merged

use micromamba in CI #500

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028f63a
use micromamba
andersy005 Aug 10, 2022
0c6eb55
update conda envs
andersy005 Aug 10, 2022
a24e4c1
Add xcollection
andersy005 Aug 10, 2022
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42 changes: 16 additions & 26 deletions .github/workflows/ci.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,10 @@ on:
- cron: '0 0 * * *' # Daily “At 00:00”
workflow_dispatch: # allows you to trigger manually

concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true

jobs:
build:
name: python-${{ matrix.python-version }}
Expand All @@ -22,25 +26,18 @@ jobs:
matrix:
python-version: ['3.8', '3.9', '3.10']
steps:
- name: Cancel previous runs
uses: styfle/cancel-workflow-action@0.10.0
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
fetch-depth: 0 # Fetch all history for all branches and tags.

- uses: conda-incubator/setup-miniconda@master
- name: Create conda environment
uses: mamba-org/provision-with-micromamba@main
with:
channels: conda-forge
channel-priority: strict
activate-environment: intake-esm-dev
auto-update-conda: false
python-version: ${{ matrix.python-version }}
cache-downloads: true
micromamba-version: 'latest'
environment-file: ci/environment.yml
mamba-version: '*'
use-mamba: true
miniforge-variant: Mambaforge
extra-specs: |
python=${{ matrix.python-version }}

- name: Install intake-esm
run: |
Expand Down Expand Up @@ -69,25 +66,18 @@ jobs:
run:
shell: bash -l {0}
steps:
- name: Cancel previous runs
uses: styfle/cancel-workflow-action@0.10.0
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
fetch-depth: 0 # Fetch all history for all branches and tags.

- uses: conda-incubator/setup-miniconda@master
- name: Create conda environment
uses: mamba-org/provision-with-micromamba@main
with:
channels: conda-forge
channel-priority: strict
activate-environment: intake-esm-dev
auto-update-conda: false
python-version: 3.9
cache-downloads: true
micromamba-version: 'latest'
environment-file: ci/environment-upstream-dev.yml
mamba-version: '*'
use-mamba: true
miniforge-variant: Mambaforge
extra-specs: |
python=3.10

- name: Install intake-esm
run: |
Expand Down
2 changes: 1 addition & 1 deletion ci/environment-upstream-dev.yml
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Expand Up @@ -27,6 +27,7 @@ dependencies:
- regionmask
- scipy
- toolz
- xcollection
- xgcm
- zarr>=2.5
- pip:
Expand All @@ -35,4 +36,3 @@ dependencies:
- git+https://github.com/fsspec/s3fs.git
- git+https://github.com/pydata/xarray.git
- git+https://github.com/jbusecke/cmip6_preprocessing.git
- -r ../requirements.txt
5 changes: 2 additions & 3 deletions ci/environment.yml
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Expand Up @@ -19,12 +19,11 @@ dependencies:
- pydantic
- pytest
- pytest-cov
# - pytest-icdiff
- pytest-sugar
- pytest-xdist
- s3fs
- scipy
- xarray>=0.19,!=0.20.0,!=0.20.1
- xcollection
- zarr >=2.5
- pip:
- -r ../requirements.txt
# - pytest-icdiff