Skip to content

Navigation Menu

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
#

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

#

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

jbloomlab / seqneut-pipeline Public

Notifications You must be signed in to change notification settings
Fork 0
Star 0

Code
Issues
Pull requests
Actions
Projects
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Security
Insights

enable plate-level indices as `upstream2` in barcode parsing#44

Merged

jbloom merged 10 commits intomainjbloomlab/seqneut-pipeline:mainfrom 40-process-upstream2jbloomlab/seqneut-pipeline:40-process-upstream2Copy head branch name to clipboard

Apr 12, 2024

+515-483

Conversation Commits10 (10)Checks Files changed

Commits

Commits on Apr 11, 2024

remove unused H3N2_sample_plate.csv file (was copy of other file)
jbloom
committed
make CSV not executable
jbloom
committed
per-plate barcode parsing
jbloom
committed
test example contains upstream2 for plate2 and plate11
jbloom
committed

Commits on Apr 12, 2024

configure miscellaneous plate to use new upstream2
jbloom
committed
parse invalid outer flank fates for barcode counting
jbloom
committed
re-run pipeline
jbloom
committed
update CHANGELOG to describe per-plate parser params
jbloom
committed
update README to describe plate-specific illumina_barcode_parser_params
jbloom
committed
update envs/count_barcodes.yml
jbloom
committed

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.