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- require: shinyjs - code coverage (TRIAL)
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^vignettes/Tooltip-On-Hovering-Node\.Rmd$ | ||
^CRAN-SUBMISSION$ | ||
^vignettes/articles$ | ||
^\.github$ |
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*.html |
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: [main, master] | ||
pull_request: | ||
branches: [main, master] | ||
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name: test-coverage.yaml | ||
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permissions: read-all | ||
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jobs: | ||
test-coverage: | ||
runs-on: ubuntu-latest | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
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steps: | ||
- uses: actions/checkout@v4 | ||
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- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
use-public-rspm: true | ||
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- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::covr, any::xml2 | ||
needs: coverage | ||
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- name: Test coverage | ||
run: | | ||
cov <- covr::package_coverage( | ||
quiet = FALSE, | ||
clean = FALSE, | ||
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | ||
) | ||
covr::to_cobertura(cov) | ||
shell: Rscript {0} | ||
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- uses: codecov/codecov-action@v4 | ||
with: | ||
fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} | ||
file: ./cobertura.xml | ||
plugin: noop | ||
disable_search: true | ||
token: ${{ secrets.CODECOV_TOKEN }} | ||
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- name: Show testthat output | ||
if: always() | ||
run: | | ||
## -------------------------------------------------------------------- | ||
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
shell: bash | ||
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- name: Upload test results | ||
if: failure() | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: coverage-test-failures | ||
path: ${{ runner.temp }}/package |
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#' @import shinyjs | ||
#' @title Export cytoscape image as PNG | ||
#' | ||
#' @description This function is used to download cytoscape image as png. | ||
#' | ||
#' @return NULL | ||
#' @export | ||
getPNG <- function() { | ||
shinyjs::runjs( | ||
" | ||
pngblob = cy.png({output: 'blob'}); | ||
const blobURL = URL.createObjectURL(pngblob); | ||
const link = document.createElement('a'); | ||
link.href = blobURL; | ||
link.download = 'cy.png'; | ||
link.click(); | ||
" | ||
) | ||
return(NULL) | ||
} |
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