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chore: update markdowns
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jhk0530 committed Sep 26, 2023
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9 changes: 6 additions & 3 deletions DESCRIPTION
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Package: shinyCyJS
Title: Create Interactive Network Visualizations in R and 'shiny'
Version: 0.0.12
Authors@R: person("Jinhwan", "Kim", email = "hwanistic@gmail.com", role = c("aut", "cre", "cph"))
Version: 1.0.0
Authors@R:
c(
person("Jinhwan", "Kim", , email = "hwanistic@gmail.com", role = c("aut", "cre", "cph"))
)
Description: Create Interactive Graph (Network) Visualizations.
'shinyCyJS' can be used in 'Shiny' apps or viewed from 'Rstudio' Viewer.
'shinyCyJS' includes API to build Graph model like node or edge with customized attributes for R.
Expand All @@ -11,7 +14,7 @@ URL: https://github.com/jhk0530/shinyCyJS
BugReports: https://github.com/jhk0530/shinyCyJS/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
RoxygenNote: 7.2.3
Imports:
htmlwidgets
Suggests:
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57 changes: 35 additions & 22 deletions NEWS.md
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# shinyCyJS 1.0.0

## New Feature

- buildEdge: now supports `tooltip` and `fontSize` (for label) @notlikethat
- buildNode: now supports `position.x` and `position.y` @assaron

## Codes

- Applied code style using `styler` package.

---

# shinyCyJS 0.0.2

## New Feature

* Added Pie background. (Supports only `Size` and `Color`)
- Added Pie background. (Supports only `Size` and `Color`)

# shinyCyJS 0.0.3

## Bug fix

* Pre-built elements didn't clear when using `rendershinyCyJS`
- Pre-built elements didn't clear when using `rendershinyCyJS`

# shinyCyJS 0.0.4

## New Feature

* Tooltip available on Node elements.
- Tooltip available on Node elements.

# shinyCyJS 0.0.5

## New Feature

* Selected elements will have different color.
* Node : ![#ff00ff](https://placehold.it/15/ff00ff/000000?text=+)
* Edge : ![#000000](https://placehold.it/15/000000/000000?text=+)
- Selected elements will have different color.
- Node : ![#ff00ff](https://placehold.it/15/ff00ff/000000?text=+)
- Edge : ![#000000](https://placehold.it/15/000000/000000?text=+)

# shinyCyJS 0.0.6

## New Feature

* New layout added
* [fcose](https://github.com/iVis-at-Bilkent/cytoscape.js-fcose)
* [spread](https://github.com/cytoscape/cytoscape.js-spread)
* [dagre](https://github.com/cytoscape/cytoscape.js-dagre)
- New layout added
- [fcose](https://github.com/iVis-at-Bilkent/cytoscape.js-fcose)
- [spread](https://github.com/cytoscape/cytoscape.js-spread)
- [dagre](https://github.com/cytoscape/cytoscape.js-dagre)

# shinyCyJS 0.0.7

## New Feature

* Multiple element can be declared with `buildElems`
- Multiple element can be declared with `buildElems`

# shinyCyJS 0.0.8

## Updated

* Core file (`cytoscape.js`) has updated with recent version. (3.13.0)
- Core file (`cytoscape.js`) has updated with recent version. (3.13.0)

## New Feature

* Now available with `Taxi` edge
- Now available with `Taxi` edge

# shinyCyJS 0.0.9

## Updated

* Manual for each function are added
- Manual for each function are added

# shinyCyJS 0.0.10

## New Feature

* Now `Label` for Edge also available.
- Now `Label` for Edge also available.

# shinyCyJS 0.0.11

## Bug fix

* `Label` for Node can be independent with Node's `id`
- `Label` for Node can be independent with Node's `id`

## Package

* Now `shinyCyJS` available with CRAN
- Now `shinyCyJS` available with CRAN

# shinyCyJS 0.0.12

## Package

* Added a `NEWS.md` file to track changes to the package.
* Build [package site](https://jhk0530.github.io/shinyCyJS/) with `pkgdown`.
* Vignette added.
* Rebuild hexSticker
- Added a `NEWS.md` file to track changes to the package.
- Build [package site](https://jhk0530.github.io/shinyCyJS/) with `pkgdown`.
- Vignette added.
- Rebuild hexSticker
35 changes: 18 additions & 17 deletions README.md
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> Note, This package is archived. (not maintained)
# shinyCyJS <img src='https://user-images.githubusercontent.com/6457691/78387821-e7e51a00-761a-11ea-9295-cd52c9e11c6f.png' width ='120' align='right'/>
# shinyCyJS <img src="https://user-images.githubusercontent.com/6457691/78387821-e7e51a00-761a-11ea-9295-cd52c9e11c6f.png" width="120" align="right"/>

<img src='https://travis-ci.com/jhk0530/shinyCyJS.svg?branch=master'/>
<img src='https://www.r-pkg.org/badges/version/shinyCyJS'/>
<img src="https://travis-ci.com/jhk0530/shinyCyJS.svg?branch=master"/> <img src="https://www.r-pkg.org/badges/version/shinyCyJS"/>

shinyCyJS is R/Shiny Package to use cytoscape.js in R environment. <br>

cytoscape.js is a great javascript library for visualize/analysis Graph theory ( network ) <br>
if you interested, please refer to this [Link](https://js.cytoscape.org/ "link"). <br>
cytoscape.js is a great javascript library for visualize/analysis Graph theory ( network ) <br> if you interested, please refer to this [Link](https://js.cytoscape.org/). <br>

shinyCyJS is built with cytoscape.js version 3.12.0. (2019/11)

# How to install :

# How to install :

```r
``` r

# CRAN Ver, 0.0.11
install.packages('shinyCyJS')
Expand All @@ -25,16 +22,17 @@ library(devtools)
devtools::install_github('jhk0530/shinyCyJS')
library(shinyCyJS)


```

# Example :
# Example :

bulid Graph with node 4 = A, B, C, D and edge = A-B, B-C, C-D, B-D <br>

<details><summary>Code</summary>
<details>

```r
<summary>Code</summary>

``` r
library(shiny)
library(shinyCyJS)

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}

shinyApp(ui,server, options = list(launch.browser = TRUE, display.mode ='normal'))

```

</details>

<img src = 'https://user-images.githubusercontent.com/6457691/68040069-d36dc000-fd10-11e9-9ef5-d021768ac548.gif' width = 400></img>
<img src="https://user-images.githubusercontent.com/6457691/68040069-d36dc000-fd10-11e9-9ef5-d021768ac548.gif" width="400"/></img>

# Versions of Javascripts

see `inst/htmlwidgets/shinyCyJS.yaml`

# Used in
# Used in

netGO <https://github.com/unistbig/netGO> <br>
GScluster <https://github.com/unistbig/GScluster> ( on progress ) <br>
<a href = 'https://academic.oup.com/bioinformatics/article/36/10/3283/5728635' target = "_blank"> netGO </a> <br> <a href = 'https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5738-6' target = '_blank'> GScluster </a> <br>

# Suggest or comment

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