Pipeline used for Determination of divergence times between subpopulations of saccharomyces eubayanus. Used the Bioinfotmatics tools for data from WGS
Develop to automate analysis of the WGS-Eukaryotic. Using DB by University of Chile.
If you want, you can use you own date too, or compare with anather workflow. Everything is automated so it will be easy to run.
- Quality control
- Trimming methods
- Mapping
- Data collection and quality assesment
- Data matrix construction
- Phylogenomic matrix
- Maximum likelihood phylogenetic analyses
Before starting the entire workflow, you need to have installed all the tools:
- Qualimap
- Trimmomatic
- GATK
- BWA
- Samtools
- IQ-TREE
*CP:check point