Scripts for compiling the somatic alterations of the pediatric cancer dataset (v1) in GenomePaint

Pediatric_SNVindel_vcf_generator

Scripts used to generate the VCF file

Pediatric_SNVindel_vcf_generator.ipynb - Pipeline to generate VCF file

Pediatric_svcnv_generator

Scripts used to generate the "svcnv" file, including fusion, SV, CNV, LOH, ITD.

Pediatric_svcnv_generator.ipynb - Pipeline to generate svcnv file