Working webpage

src/Makefile

@@ -7,16 +7,17 @@ book: docs
 	jupyter-book build ../static
 
 .PHONY: docs
-docs: ../static/core/core.yaml
-	gen-doc ../static/core/core.yaml -d ../static/core/ --hierarchical-class-view -vvv --log_level=DEBUG --stacktrace
+docs: ../static/core/model.yaml
+	cp index.md ../static/core/index.md
+	gen-project ../static/core/model.yaml -d ../static/core/
 
-../static/core/core.yaml:
+validate:
+	linkml-validate --legacy-mode -s ../static/core/model.yaml
+
+../static/core/model.yaml:
 	mkdir ../static/core
 	./mklinkml.py ../static/core
 
-validate:
-	linkml-validate --legacy-mode -s ../static/core/core.yaml
-
 .PHONY: clean
 clean:
 	rm -rf ../static/core

src/index.md

@@ -0,0 +1,9 @@
+# OME Core Model
+
+Other resources:
+
+* {download}`./jsonld/model.jsonld`
+* {download}`./jsonld/model.context.jsonld`
+* {download}`./shex/model.shex`
+* {download}`./owl/model.owl.ttl`
+* {download}`./excel/model.xlsx`

src/linkml.template

@@ -1,5 +1,5 @@
-id: https://ld.openmicroscopy.org/core
-name: core
+id: https://ld.openmicroscopy.org/core/
+name: OME-Core-Model
 
 description: |-
     Linked data description of the OME Data Model
@@ -12,7 +12,7 @@ imports:
   - linkml:types
 
 prefixes:
-  core: https://ld.openmicroscopy.org/core
+  core: https://ld.openmicroscopy.org/core/
   linkml: https://w3id.org/linkml/
   schema: http://schema.org/
   rdfs: http://www.w3.org/2000/01/rdf-schema#
@@ -51,9 +51,9 @@ classes:
     {%- endif %}
 
     description: |-
-        ```
+
         {{ schema.get("description", "TODO") | indent(8) }}
-        ```
+
 
     {%- if schema["mixins"] %}
     mixins:

src/mklinkml.py

@@ -229,7 +229,7 @@ def generate(output_dir):
             print(f"Processing {name}...")
             classes[name] = schema
 
-    with open(os.path.join(output_dir, "core.yaml"), "w") as o:
+    with open(os.path.join(output_dir, "model.yaml"), "w") as o:
         o.write(template.render(classes=classes, enums=enums))
 
 

static/.gitignore

@@ -0,0 +1,2 @@
+core
+_build

static/_toc.yml

@@ -6,7 +6,8 @@ root: index
 
 parts:
 
-- caption: Core model
-  file: core/index
+- caption: Models
   chapters:
-  - glob: core/*
+  - file: core/index
+  - glob: core/docs/*
+  - glob: core/docs/types/*

static/index.md

@@ -2,5 +2,3 @@
 
 This [JupyterBook](https://jupyterbook.org/) provides a
 landing page for the Linked Data support in OME ("ome-ld").
-
-![logo](logo.png "OME logo")