Ready for v0.6.2

kusterlab · Jan 3, 2024 · 4d29b9e · 4d29b9e
1 parent 8d49b46
commit 4d29b9e
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Showing 5 changed files with 17 additions and 12 deletions.
diff --git a/CHANGELOG b/CHANGELOG
@@ -1,3 +1,8 @@
+v0.6.2
+- Update job-pool to v0.2.6 to fix hanging maxlfq quant
+- Fix gene_level support in quantification.py
+- Speed optimizations for digest.py
+
 v0.6.1
 - Fix `--gene-level` option
 - Switch to job-pool package for multiprocessing

diff --git a/admin/release_checklist.txt b/admin/release_checklist.txt
diff --git a/docs/release_checklist.md b/docs/release_checklist.md
@@ -0,0 +1,7 @@
+1. test if unit and system tests pass: `make test; make integration_test`
+2. update version number: `poetry version <major/minor/patch>`
+3. add information to changelog on master `git log --pretty="%s"`
+4. commit and push to master on github
+5. create a release on github, use the tag naming convention `rel-<major>-<minor>-<patch>`, e.g. `rel-0-01-1`
+   this automatically triggers a GitHub actions workflow that builds and publishes the packages to TestPyPI and PyPI
+6. create a branch on github with the version number
diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "picked_group_fdr"
-version = "0.6.1"
+version = "0.6.2"
 description = "Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments"
 authors = ["Matthew The <matthew.the@tum.de>"]
 license= "Apache-2.0"
@@ -25,7 +25,7 @@ mokapot = ">=0.3"
 Bottleneck = "^1.3.5"
 toml = "^0.10.2"
 pyqt5 = {version = "^5.15.7", optional = true}
-job-pool = "^0.2.5"
+job-pool = "^0.2.6"
 
 [tool.poetry.dev-dependencies]
 pytest = "^6.2.4"