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🔊 Raise error if organism can't be created from bionty #167

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merged 1 commit into from
Nov 19, 2024
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🔊 Raise error if organism can't be created from bionty #167

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4 changes: 4 additions & 0 deletions bionty/_bionty.py
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Original file line number Diff line number Diff line change
Expand Up @@ -45,6 +45,10 @@ def create_or_get_organism_record(
try:
# create a organism record from bionty reference
organism_record = Organism.from_source(name=organism)
if organism_record is None:
raise ValueError(
f"Organism {organism} can't be created from the bionty reference, check your spelling or create it manually."
)
# link the organism record to the default bionty source
organism_record.source = get_source_record(
bt_base.Organism(), Organism
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