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Update submodule bioparser
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rvaser committed Aug 15, 2019
1 parent 871c8de commit 38ca3c9
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8 changes: 4 additions & 4 deletions README.md
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# Racon

[![Latest GitHub release](https://img.shields.io/github/release/isovic/racon.svg)](https://github.com/isovic/racon/releases/latest)
[![Build status for gcc/clang](https://travis-ci.org/isovic/racon.svg?branch=master)](https://travis-ci.org/isovic/racon)
[![Latest GitHub release](https://img.shields.io/github/release/lbcb-sci/racon.svg)](https://github.com/lbcb-sci/racon/releases/latest)
[![Build status for gcc/clang](https://travis-ci.org/lbcb-sci/racon.svg?branch=master)](https://travis-ci.org/lbcb-sci/racon)
[![Published in Genome Research](https://img.shields.io/badge/published%20in-Genome%20Research-blue.svg)](https://doi.org/10.1101/gr.214270.116)

Consensus module for raw de novo DNA assembly of long uncorrected reads.
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To install Racon run the following commands:

```bash
git clone --recursive https://github.com/isovic/racon.git racon
git clone --recursive https://github.com/lbcb-sci/racon.git racon
cd racon
mkdir build
cd build
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### CUDA Support
Racon makes use of [NVIDIA's ClaraGenomicsAnalysis SDK](https://github.com/clara-genomics/ClaraGenomicsAnalysis) for CUDA accelerated polishing and alignment.

To build `racon` with CUDA support, add `-Dracon_enable_cuda=ON` while running `cmake`. If CUDA support is unavailable, the `cmake` step will error out.
To build `racon` with CUDA support, add `-Dracon_enable_cuda=ON` while running `cmake`. If CUDA support is unavailable, the `cmake` step will error out.
Note that the CUDA support flag does not produce a new binary target. Instead it augments the existing `racon` binary itself.

```bash
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2 changes: 1 addition & 1 deletion src/main.cpp
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#include "cuda/cudapolisher.hpp"
#endif

static const char* version = "v1.4.3";
static const char* version = "v1.4.4";
static const int32_t CUDAALIGNER_INPUT_CODE = 10000;

static struct option options[] = {
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2 changes: 1 addition & 1 deletion vendor/bioparser

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