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I assume paftools stat needs a CIGAR string via --cs option etc.
Perhaps exit after first missing CIGAR and give a friendly error to this effect?
WARNING: no CIGAR at line 1
<snip>
/home/linuxbrew/.linuxbrew/bin/paftools.js:578: TypeError: Cannot read property '0' of undefined
var st = regs[0][0], en = regs[0][1], l = 0;
^
TypeError: Cannot read property '0' of undefined
at cov_len (/home/linuxbrew/.linuxbrew/bin/paftools.js:578:19)
at paf_stat (/home/linuxbrew/.linuxbrew/bin/paftools.js:679:11)
at main (/home/linuxbrew/.linuxbrew/bin/paftools.js:2020:26)
at /home/linuxbrew/.linuxbrew/bin/paftools.js:2033:1
The text was updated successfully, but these errors were encountered:
I assume
paftools stat
needs a CIGAR string via--cs
option etc.Perhaps exit after first missing CIGAR and give a friendly error to this effect?
The text was updated successfully, but these errors were encountered: