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Minimap2-2.17 (r941)
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@lh3 lh3 released this 05 May 03:50
· 278 commits to master since this release
v2.17
7bc87b4

Changes since the last release:

  • Fixed flawed CIGARs like 5I6D7I (#392).

  • Bugfix: TLEN should be 0 when either end is unmapped (#373 and #365).

  • Bugfix: mappy is unable to write index (#372).

  • Added option --junc-bed to load known gene annotations in the BED12
    format. Minimap2 prefers annotated junctions over novel junctions (#197 and
    #348). GTF can be converted to BED12 with paftools.js gff2bed.

  • Added option --sam-hit-only to suppress unmapped hits in SAM (#377).

  • Added preset splice:hq for high-quality CCS or mRNA sequences. It applies
    better scoring and improves the sensitivity to small exons. This preset may
    introduce false small introns, but the overall accuracy should be higher.

This version produces nearly identical alignments to v2.16, except for CIGARs
affected by the bug mentioned above.

(2.17: 5 May 2019, r941)

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