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Release minipileup-1.0 (r11)
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lh3 committed Mar 31, 2024
1 parent dd4123d commit 145ab06
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2 changes: 1 addition & 1 deletion README.md
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Minipileup is a simple pileup-based variant caller. It takes a reference FASTA
and one or multiple alignment BAM, and outputs a multi-sample VCF along with
and one or multiple alignment BAM as input, and outputs a multi-sample VCF along with
allele counts:
```sh
minipileup -yf ref.fa aln1.bam aln2.bam > var.vcf
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2 changes: 1 addition & 1 deletion pileup.c
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#include "ksort.h"
#include "ketopt.h"

#define VERSION "0.1.0"
#define VERSION "1.0-r11"

const char *hts_parse_reg(const char *s, int *beg, int *end);
void *bed_read(const char *fn);
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