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Have cutN report N:s also at beginning of sequence #160

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Have cutN report N:s also at beginning of sequence #160

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6 changes: 2 additions & 4 deletions seqtk.c
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Original file line number Diff line number Diff line change
Expand Up @@ -1041,10 +1041,8 @@ int stk_cutN(int argc, char *argv[])
while ((l = kseq_read(ks)) >= 0) {
int k = 0, begin = 0, end = 0;
while (find_next_cut(ks, k, &begin, &end) >= 0) {
if (begin != 0) {
if (gap_only) printf("%s\t%d\t%d\n", ks->name.s, begin, end);
else print_seq(stdout, ks, k, begin);
}
if (gap_only) printf("%s\t%d\t%d\n", ks->name.s, begin, end);
else print_seq(stdout, ks, k, begin);
k = end;
}
if (!gap_only) print_seq(stdout, ks, k, l);
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