update

lmdu · Dec 24, 2024 · 1805c90 · 1805c90
1 parent bde3db2
commit 1805c90
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Showing 3 changed files with 5 additions and 3 deletions.
diff --git a/.github/workflows/codecov.yml b/.github/workflows/codecov.yml
@@ -23,12 +23,12 @@ jobs:
       - name: Generate coverage report
         run: |
           python setup.py build_ext -i --debug
-          gcovr --filter src/ --xml -o coverage.xml
+          gcovr --filter src --xml -o coverage.xml
 
       - name: Upload Coverage to CodeCov
         uses: codecov/codecov-action@v5
         with:
           fail_ci_if_error: true
-          files: Coverage.xml
+          files: coverage.xml
           token: ${{ secrets.CODECOV_TOKEN }}
           verbose: true
diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
@@ -30,7 +30,7 @@ jobs:
           CIBW_BUILD_VERBOSITY: 0
           #CIBW_ARCHS_LINUX: auto aarch64
           #CIBW_ARCHS_MACOS: x86_64 arm64 universal2
-          CIBW_TEST_COMMAND: python setup.py test
+          CIBW_TEST_COMMAND: python setup.py build_ext -i & pytest tests
           CIBW_TEST_REQUIRES: pyfaidx==0.5.8 pytest
 
       - name: Display wheel

diff --git a/setup.py b/setup.py
@@ -99,13 +99,15 @@ def build_extensions(self):
                     if opt != '-O2'
                 ]
                 self.compiler.compiler_so.append('-O0')
+                self.compiler.compiler_so.append('--coverage')
 
                 self.compiler.linker_so = [
                     opt
                     for opt in self.compiler.linker_so
                     if opt != '-O2'
                 ]
                 self.compiler.linker_so.append('-O0')
+                self.compiler.linker_so.append('--coverage')
 
             else:
                 self.compiler.compiler_so = [