Full Stack position test project

A tiny project with a basic coding exercise. The project includes writing a simple web service using django on sqlite. The web page will allow the user to run a blast search of a single sequence on a given bacterial genome (in the data folder). Blast must run using docker!

Requirements

The following tools are required to complete the task

1. python3 with the following requrements:

django
biopython

You may add packages as needed. Add a requirements.txt file including everything you use. 2) docker

Tasks

1. Clone the project into a directory
2. Create a virtual environment and install neccesery dependecies (python3 -m venv venv)
3. Create a webpage that allows the user to enter a single DNA sequence containing only the letter A,G,C and T to a form. Web pages should be designed using bootstrap 4.
4. Use the BlastJob model (models.py) to create the job and run a search task (use the blast command from the Tools section). The search should run in an asynchronous manner (the page should not wait for the search to finish). The results page should not fully refresh to check the status (js based solution)!
5. A web page should present the job's results when the job if finished

Dont forget to run python3 manage.py makemigrations blast_test and python3 manage.py migrate before running the server

Tools

Running blast should be done using the ncbi/blast image found in ducker hub. The internal blast command: blastn -query <query_file> -subject genome/ecoli_k12_mg1655.fasta -outfmt "6 <required parameters based on BlastResult model>"

You can read about the tabular format output 6 here Note: sequence can be extracted using a function in utils.py