The courses use Jupyter notebooks, which means that Jupyter must be installed to use them. Please see the Jupyter installation instructions for details.
To use the courses, first take a clone of this repository:
git clone https://github.com/sanger-pathogens/pathogen-informatics-training.git
Then view the available courses. This will start Jupyter at the main index page:
jupyter notebook pathogen-informatics-training/Notebooks/index.ipynb