chore: dev install with environment.yml

Makefile

@@ -10,13 +10,13 @@ print-%  : ; @echo $* = $($*)
 ####
 
 create:
-	mamba create --name $(PROJECT) --yes --force --channel conda-forge pygmt geopandas python=3.11
+	mamba env create --file environment.yml
 
 install:
-	pip install -e .[all]
+	pip install --no-deps -e .
 
 remove:
-	mamba remove --name $(PROJECT) --all
+	mamba env remove --name $(PROJECT) --yes
 
 pip_install:
 	pip install $(PROJECT)[all]==$(VERSION)

docs/contributing.md

@@ -396,6 +396,7 @@ Now, when submitting a PR, RTD will automatically build the docs and update the
 * wait for a PR to be opened in the [feedstock](https://github.com/conda-forge/polartoolkit-feedstock)
 * update any changed dependencies in the feedstock PR and merge
 * wait for `conda` to publish the new version [here](https://anaconda.org/conda-forge/polartoolkit)
+* manually add dependency changes to `environment.yml`
 * update backup `env/environment.yml`
 * update polartoolkit version in `environment.yml` in [PolarToolkit-Binder repo](https://github.com/mdtanker/polartoolkit-binder/blob/main/environment.yml)
 * test `PyPI` version with:

environment.yml

@@ -0,0 +1,65 @@
+name: polartoolkit
+channels:
+  - conda-forge
+  - nodefaults
+dependencies:
+  - python=3.12
+  # Required dependencies
+  - pandas
+  - openpyxl
+  - pooch
+  - tqdm
+  - verde>=1.8.0
+  - xarray
+  - harmonica>=0.6.0
+  - pyproj
+  - rioxarray
+  - scipy
+  - numpy
+  - pygmt>=0.10.0
+  - geopandas<1.0
+  - zarr
+  - python-dotenv
+  - requests
+  - deprecation
+  - earthaccess
+  # Optional dependencies
+  # interactive
+  - geoviews
+  - cartopy
+  - ipyleaflet
+  - ipython
+  # test
+  - pytest>=6
+  - pytest-cov>=3
+  - deepdiff
+  # docs
+  - sphinx>=4.0
+  - sphinx-book-theme>=0.3
+  - nbsphinx
+  - nbconvert
+  - sphinxcontrib-bibtex
+  # - ipython # repeat
+  # included with pip below
+  # - myst_parser
+  # - sphinx_copybutton
+  # - sphinx_autoapi
+  # - sphinx_autodoc_typehints
+  # - sphinx_design
+  # dev
+  - nox
+  - pre-commit
+  - pylint>=3.2
+  - python-semantic-release>=8
+  - ipykernel
+  - jupyterlab
+  - mypy
+  - pathspec
+  # below packages need to be installed with pip
+  - pip
+  - pip:
+    - sphinx_design
+    - sphinx_copybutton
+    - sphinx_autodoc_typehints
+    - sphinx_autoapi
+    - myst_parser

pyproject.toml

@@ -35,7 +35,7 @@ keywords = ["cryosphere", "antarctica", "arctic", "greenland", "maps", "plotting
 
 dependencies = [
     "pandas",
-    "openpyxl",
+    "openpyxl", # needed for fetch.ghf to read an excel file into pandas
     "pooch",
     "tqdm",
     "verde>=1.8.0",
@@ -68,16 +68,16 @@ test = [
 ]
 docs = [
   "sphinx>=4.0",
-  "myst_parser",
-  "sphinx_copybutton",
-  "sphinx_autoapi",
-  "sphinx_autodoc_typehints",
   "sphinx-book-theme>=0.3",
-  "sphinx_design",
   "nbsphinx",
   "nbconvert",
   "sphinxcontrib-bibtex",
   "ipython",
+  "myst_parser",
+  "sphinx_copybutton",
+  "sphinx_autoapi",
+  "sphinx_autodoc_typehints",
+  "sphinx_design",
 ]
 dev = [
     "polartoolkit[interactive,test,docs]",