Merge pull request #147 from metagenlab/nj/citation

Cite zDB paper on home page and about pages.
metagenlab · Jan 22, 2025 · 621e276 · 621e276
2 parents 80a194d + f412c3f
commit 621e276
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,6 +10,8 @@ to [Common Changelog](https://common-changelog.org)
 
 ### Changed
 
+- Cite zDB paper on home page and about pages. ([#147](https://github.com/metagenlab/zDB/pull/147)) (Niklaus Johner)
+
 ### Added
 
 - Add command line parameter to set CSRF_TRUSTED_ORIGINS. ([#145](https://github.com/metagenlab/zDB/pull/145)) (Niklaus Johner)

diff --git a/webapp/assets/bibliography/references.bib b/webapp/assets/bibliography/references.bib
@@ -1,4 +1,18 @@
 
+@article{marquis_zdb_2024,
+  title = {{zDB}: bacterial comparative genomics made easy},
+  volume = {9},
+  url = {https://journals.asm.org/doi/10.1128/msystems.00473-24},
+  doi = {10.1128/msystems.00473-24},
+  number = {7},
+  journal = {mSystems},
+  author = {Marquis, Bastian and Pillonel, Trestan and Carrara, Alessia and Bertelli, Claire},
+  month = {jun},
+  year = {2024},
+  note = {Publisher: American Society for Microbiology},
+  pages = {e00473--24},
+}
+
 @article{Pallen2010,
   author = {Pallen, Mark J and Loman, Nicholas J and Penn, Charles W},
   doi = {10.1016/j.mib.2010.08.003},

diff --git a/webapp/templates/chlamdb/credits.html b/webapp/templates/chlamdb/credits.html
@@ -3,8 +3,8 @@
 <html>
 
 <head>
-    {% load static %}
-    {% include "chlamdb/header.html" %}
+  {% load static %}
+  {% include "chlamdb/header.html" %}
 </head>
 
 <body>
@@ -15,24 +15,32 @@
       <div class="container-fluid" id="main_container">
         <div class="row">
           <div id="wrapper">
-              <div id="page-content-wrapper">
-                <div class="row">
-                  <div class="col-lg-12" style="font: central;">
-                   {% include "chlamdb/menu.html" %}
+            <div id="page-content-wrapper">
+              <div class="row">
+                <div class="col-lg-12" style="font: central;">
+                  {% include "chlamdb/menu.html" %}
                   <div id="credits">
-                      <h2>ZDB - Comparative genomics database</h2>
-                      <h2>Credits</h2>
+                    <h2>ZDB reference</h2>
+                    {% with entry_list|first as entry %}
                       <ul>
-                          {% for entry in entry_list%}
-                              <li>
-                              {{entry.0|safe}} (<a href="{{entry.1}}">Pubmed</a>) <br>
-                              </li>
-                          {%endfor%}
+                        <li>
+                          {{entry.0|safe}} (<a href="{{entry.1}}">Pubmed</a>) <br>
+                        </li>
                       </ul>
-                  </div>
+                    {% endwith %}
+
+                    <h2>Other references</h2>
+                    <ul>
+                      {% for entry in entry_list|slice:"1:"%}
+                        <li>
+                          {{entry.0|safe}} (<a href="{{entry.1}}">Pubmed</a>) <br>
+                        </li>
+                      {%endfor%}
+                    </ul>
                   </div>
                 </div>
               </div>
+            </div>
           </div>
         </div>
       </div>

diff --git a/webapp/templates/chlamdb/home.html b/webapp/templates/chlamdb/home.html
@@ -346,10 +346,10 @@ <h3 class="title">{{metadata.group_metadata.object_name_plural}}</h3>
                       <div id="container_boxes">
                         <div id="label">  Citation  </div>
                         <div class="panel-body">
-                          <a href="https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gkz924/5609527" target="_blank" style="font-size: 1.2em; color:#555;">
-                            <strong> ChlamDB: a comparative genomics database of the phylum <i>Chlamydiae</i> and other members of the <i>Planctomycetes-Verrucomicrobiae-Chlamydiae</i> superphylum </strong><br>
-                            Trestan Pillonel, Florian Tagini, Claire Bertelli, Gilbert Greub <br>
-                            Nucleic Acids Research, 2019, https://doi.org/10.1093/nar/gkz924
+                          <a href="https://journals.asm.org/doi/10.1128/msystems.00473-24" target="_blank" style="font-size: 1.2em; color:#555;">
+                            <strong> zDB: bacterial comparative genomics made easy </strong><br>
+                            Bastian Marquis, Trestan Pillonel, Alessia Carrara, Claire Bertelli<br>
+                            mSystems, 2024, https://doi.org/10.1128/msystems.00473-24
                           </a>
                         </div>
                       </div>