Fix reference database pipeline #142
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Conda is now just as fast as mamba, so there is no reason anymore to use mamba.
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Tests were failing as the reference database gets written to a temporary directory in
/tmp/xyz, which is not accessible from within the container, so all the statements moving files to that location were actually moving them to that path in the container. We now exclusively use nextflow's publishing mechanism, which is anyway much cleaner.Checklist