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Cite zDB paper on home page and about pages. #147

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Jan 22, 2025
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Cite zDB paper on home page and about pages. #147

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04dbe49
Cite zDB instead of ChlamDB on home page.
njohner Jan 22, 2025
0e84c4d
Improve indentations in credits.html template.
njohner Jan 22, 2025
7fa8421
Add zDB reference to credits page.
njohner Jan 22, 2025
f412c3f
Add changelog entry.
njohner Jan 22, 2025
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -10,6 +10,8 @@ to [Common Changelog](https://common-changelog.org)

### Changed

- Cite zDB paper on home page and about pages. ([#147](https://github.com/metagenlab/zDB/pull/147)) (Niklaus Johner)

### Added

- Add command line parameter to set CSRF_TRUSTED_ORIGINS. ([#145](https://github.com/metagenlab/zDB/pull/145)) (Niklaus Johner)
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14 changes: 14 additions & 0 deletions webapp/assets/bibliography/references.bib
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@@ -1,4 +1,18 @@

@article{marquis_zdb_2024,
title = {{zDB}: bacterial comparative genomics made easy},
volume = {9},
url = {https://journals.asm.org/doi/10.1128/msystems.00473-24},
doi = {10.1128/msystems.00473-24},
number = {7},
journal = {mSystems},
author = {Marquis, Bastian and Pillonel, Trestan and Carrara, Alessia and Bertelli, Claire},
month = {jun},
year = {2024},
note = {Publisher: American Society for Microbiology},
pages = {e00473--24},
}

@article{Pallen2010,
author = {Pallen, Mark J and Loman, Nicholas J and Penn, Charles W},
doi = {10.1016/j.mib.2010.08.003},
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36 changes: 22 additions & 14 deletions webapp/templates/chlamdb/credits.html
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Expand Up @@ -3,8 +3,8 @@
<html>

<head>
{% load static %}
{% include "chlamdb/header.html" %}
{% load static %}
{% include "chlamdb/header.html" %}
</head>

<body>
Expand All @@ -15,24 +15,32 @@
<div class="container-fluid" id="main_container">
<div class="row">
<div id="wrapper">
<div id="page-content-wrapper">
<div class="row">
<div class="col-lg-12" style="font: central;">
{% include "chlamdb/menu.html" %}
<div id="page-content-wrapper">
<div class="row">
<div class="col-lg-12" style="font: central;">
{% include "chlamdb/menu.html" %}
<div id="credits">
<h2>ZDB - Comparative genomics database</h2>
<h2>Credits</h2>
<h2>ZDB reference</h2>
{% with entry_list|first as entry %}
<ul>
{% for entry in entry_list%}
<li>
{{entry.0|safe}} (<a href="{{entry.1}}">Pubmed</a>) <br>
</li>
{%endfor%}
<li>
{{entry.0|safe}} (<a href="{{entry.1}}">Pubmed</a>) <br>
</li>
</ul>
</div>
{% endwith %}

<h2>Other references</h2>
<ul>
{% for entry in entry_list|slice:"1:"%}
<li>
{{entry.0|safe}} (<a href="{{entry.1}}">Pubmed</a>) <br>
</li>
{%endfor%}
</ul>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
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8 changes: 4 additions & 4 deletions webapp/templates/chlamdb/home.html
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Expand Up @@ -346,10 +346,10 @@ <h3 class="title">{{metadata.group_metadata.object_name_plural}}</h3>
<div id="container_boxes">
<div id="label"> Citation </div>
<div class="panel-body">
<a href="https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gkz924/5609527" target="_blank" style="font-size: 1.2em; color:#555;">
<strong> ChlamDB: a comparative genomics database of the phylum <i>Chlamydiae</i> and other members of the <i>Planctomycetes-Verrucomicrobiae-Chlamydiae</i> superphylum </strong><br>
Trestan Pillonel, Florian Tagini, Claire Bertelli, Gilbert Greub <br>
Nucleic Acids Research, 2019, https://doi.org/10.1093/nar/gkz924
<a href="https://journals.asm.org/doi/10.1128/msystems.00473-24" target="_blank" style="font-size: 1.2em; color:#555;">
<strong> zDB: bacterial comparative genomics made easy </strong><br>
Bastian Marquis, Trestan Pillonel, Alessia Carrara, Claire Bertelli<br>
mSystems, 2024, https://doi.org/10.1128/msystems.00473-24
</a>
</div>
</div>
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