MetaCoAG v1.2.2

• Supports only MacOS and Linux from now on as some dependencies are not available for Windows.
• Integrated cogent3 for sequence reading.
• Includes minor bug fixes.

New Contributors

• @GavinHuttley made their first contribution in #47

Full Changelog: v1.2.1...v1.2.2

Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v1.2.1

• Includes a major CLI refactor.
• Includes minor bug fixes.

Full Changelog: v1.2.0...v1.2.1

Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v1.2.0

• Major code refactor to be able to install as a package.
• Replaced setup.py with pyproject.toml.
• Now installable with flit as well.
• Updated code testing coverage.
• Includes minor bug fixes.

Full Changelog: v1.1.4...v1.2.0

Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v1.1.4

• Change python-igraph to igraph on PyPI release.
• Fix path issue with the default marker.hmm file
• Minor bug fixes

Full Changelog: v1.1.3...v1.1.4

Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v1.1.3

• Provide support to define .hmm files of custom sets of marker genes
• Fix path issue with the default marker.hmm file
• Minor bug fixes

Full Changelog: v1.1.2...v1.1.3

Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v1.1.2

• Update logging messages
• Improve parallelism in certain steps
• Replace argparse with click
• Minor bug fixes

Full Changelog: v1.1.1...v1.1.2

Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v1.1.1

• Add support to combine coverage values from CoverM
• Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v1.1

• Add support to handle original contigs from Flye
• Make MetaCoAG pip installable
• Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v1.0

• This is the first stable release of MetaCoAG used in the preprint.
• Updated matching and label propagation steps.
• Added postprocessing step for bins.
• Please report any issues and suggestions under MetaCoAG Issues.

MetaCoAG v0.2

• This is the second pre-release of MetaCoAG.
• Added minor optimisations and code comments.
• Please report any issues and suggestions under MetaCoAG Issues.