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  1. lute lute Public

    R package for deconvolution simulation and optimization.

    R 2

  2. recountmethylation recountmethylation Public

    Utilities to access and analyze harmonized databases of public DNAm arrays from GEO.

    R 9 2

  3. recountmethylation_instance recountmethylation_instance Public archive

    Synchronize public DNAm array data. This resource provides a full Snakemake workflow to download, harmonize, and compile IDAT-derived DNAm and SOFT-derived sample metadata from GEO experiments.

    Shell 1

  4. r-nf_deconvolution r-nf_deconvolution Public archive

    Deconvolution NextFlow workflow using R and Rscripts.

    R 1

  5. recountmethylation.pipeline recountmethylation.pipeline Public archive

    Functions and utilities for pipeline to compile and harmonize public GEO DNA methylation array data and sample metadata. For implementation, see the `recountmethylation_instance` resource.

    R 2 1

  6. awesome-deconvolution awesome-deconvolution Public template

    List of deconvolution methods and resources.

    1