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Department of Biostatistics, JHSPH
- https://metamaden.github.io/
- https://orcid.org/0000-0002-2212-4894
- @MadenSean
- in/sean-maden-41623640
- https://orcid.org/0000-0002-2212-4894
Highlights
- Pro
Pinned Loading
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recountmethylation
recountmethylation PublicUtilities to access and analyze harmonized databases of public DNAm arrays from GEO.
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recountmethylation_instance
recountmethylation_instance Public archiveSynchronize public DNAm array data. This resource provides a full Snakemake workflow to download, harmonize, and compile IDAT-derived DNAm and SOFT-derived sample metadata from GEO experiments.
Shell 1
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r-nf_deconvolution
r-nf_deconvolution Public archiveDeconvolution NextFlow workflow using R and Rscripts.
R 1
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recountmethylation.pipeline
recountmethylation.pipeline Public archiveFunctions and utilities for pipeline to compile and harmonize public GEO DNA methylation array data and sample metadata. For implementation, see the `recountmethylation_instance` resource.
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awesome-deconvolution
awesome-deconvolution Public templateList of deconvolution methods and resources.
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