Upgrade to nmdc-schema v11.0.1

[pkalita-lbl]

Despite the branch name, these changes build the submission-schema off of nmdc-schema v11.0.1.

Changes outside the normal upgrade process:

• Because the post-Berkeley nmdc-schema uses alias_contexts on StructuredAlias instances, this project needed a more recent version of linkml to load nmdc-schema v11.x.x. These changes make the linkml dependency the same as it is in the nmdc-schema project.
• With the linkml upgrade, oaklib and schemasheets also needed to be upgraded to make all of the transitive dependencies compatible.
• gen-pop-linkml2sheets also became incompatible. That project has been archived. With no updates forthcoming, I just removed it as a dependency from this project. I believe it had beed added for some exploratory work; it's not part of the actual build process.
• sheets-and-friends needed to be upgraded to deal with the downstream consequences of minimum_value and maximum_value possibly not being numeric anymore in the latest metamodel.
• The new nmdc-schema has a lot of new inlined and inlined_as_list attributes (which it should!), but submission-schema overrides the multivalued attribute on most of those slots. So I've added yq commands (not my favorite, but it's SOP for now) to remove those from multivalued: false slot definitions.

[eecavanna]

I'm not too familiar with the submission schema. Given the PR description (thank you!), nothing in the diff looks problematic or unintentional to me, and I see that references to nmdc-schema version (Git tag) v10.8.0 have been replaced with references to version (Git tag) v11.0.1

[turbomam]

Good PR, @pkalita-lbl . I appreciate your willingness to solve a problem with yq and am open to better global solutions in the future