Upgrading Firely packages to v5. (#4760)

* Upgrading Firely packages to v5.

* Fixing some build issues due to a version of System.Text.Encoding.Web

* Fixing more test failures for R5

* Updates R5 ResourcePath/CodeSystem mappings

* fixing more test failures.

* Fixing more test failures

* More bug Fixes

* Updating search parameter definition urls in unsupported-search-parameters.json.

* Changing from #if R5 to #if Stu3 || R4 || R4B

* Fixing more test failures

* Fixing more bugs

* Removed lines from unsupported-search-parameters.json

* Addressing Reviewer's Comments

* Addressing reviewers comments 2

* Deleting 84.sql

* Undoing a change in 84.sql

* Addressing copliot reccommendation.

---------

Co-authored-by: Brendan Kowitz <bkowitz@microsoft.com>

Directory.Packages.props

@@ -2,7 +2,8 @@
   <!-- Shared dependencies versions.-->
   <PropertyGroup>
     <HealthcareSharedPackageVersion>7.1.183</HealthcareSharedPackageVersion>
-    <Hl7FhirVersion>4.3.0</Hl7FhirVersion>
+    <Hl7FhirVersion>5.4.0</Hl7FhirVersion>
+    <Hl7FhirLegacyVersion>5.3.0</Hl7FhirLegacyVersion>
   </PropertyGroup>
   <ItemGroup Label="CVE Mitigation">
     <!--Please include the CGA id if possible-->
@@ -40,17 +41,23 @@
     <PackageVersion Include="DotNet.ReproducibleBuilds" Version="1.2.25" />
     <PackageVersion Include="Ensure.That" Version="10.1.0" />
     <PackageVersion Include="FluentValidation" Version="11.11.0" />
+    <PackageVersion Include="Hl7.Fhir.Base" Version="$(Hl7FhirVersion)" />
+    <PackageVersion Include="Hl7.Fhir.STU3" Version="$(Hl7FhirVersion)" />
     <PackageVersion Include="Hl7.Fhir.R4" Version="$(Hl7FhirVersion)" />
     <PackageVersion Include="Hl7.Fhir.R4B" Version="$(Hl7FhirVersion)" />
     <PackageVersion Include="Hl7.Fhir.R5" Version="$(Hl7FhirVersion)" />
-    <PackageVersion Include="Hl7.Fhir.Serialization" Version="$(Hl7FhirVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Validation.Legacy.STU3" Version="$(Hl7FhirLegacyVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Validation.Legacy.R4" Version="$(Hl7FhirLegacyVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Validation.Legacy.R4B" Version="$(Hl7FhirLegacyVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Validation.Legacy.R5" Version="$(Hl7FhirLegacyVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Specification.Data.STU3" Version="$(Hl7FhirVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Specification.Data.R4" Version="$(Hl7FhirVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Specification.Data.R4B" Version="$(Hl7FhirVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Specification.Data.R5" Version="$(Hl7FhirVersion)" />
+    <PackageVersion Include="Hl7.Fhir.Specification.STU3" Version="$(Hl7FhirVersion)" />
     <PackageVersion Include="Hl7.Fhir.Specification.R4" Version="$(Hl7FhirVersion)" />
     <PackageVersion Include="Hl7.Fhir.Specification.R4B" Version="$(Hl7FhirVersion)" />
     <PackageVersion Include="Hl7.Fhir.Specification.R5" Version="$(Hl7FhirVersion)" />
-    <PackageVersion Include="Hl7.Fhir.Specification.STU3" Version="$(Hl7FhirVersion)" />
-    <PackageVersion Include="Hl7.Fhir.STU3" Version="$(Hl7FhirVersion)" />
-    <PackageVersion Include="Hl7.Fhir.Support.Poco" Version="$(Hl7FhirVersion)" />
-    <PackageVersion Include="Hl7.FhirPath" Version="$(Hl7FhirVersion)" />
     <PackageVersion Include="IdentityServer4" Version="4.1.2" />
     <PackageVersion Include="MediatR" Version="12.4.1" />
     <PackageVersion Include="Microsoft.ApplicationInsights.AspNetCore" Version="2.22.0" />
@@ -86,8 +93,8 @@
     <PackageVersion Include="Microsoft.Health.Encryption" Version="$(HealthcareSharedPackageVersion)" />
     <PackageVersion Include="Microsoft.Health.Extensions.BuildTimeCodeGenerator" Version="$(HealthcareSharedPackageVersion)" />
     <PackageVersion Include="Microsoft.Health.Extensions.DependencyInjection" Version="$(HealthcareSharedPackageVersion)" />
-    <PackageVersion Include="Microsoft.Health.Fhir.Anonymizer.R4.Core" Version="3.1.0.62" />
-    <PackageVersion Include="Microsoft.Health.Fhir.Anonymizer.Stu3.Core" Version="3.1.0.62" />
+    <PackageVersion Include="Microsoft.Health.Fhir.Anonymizer.R4.Core" Version="3.1.0.90" />
+    <PackageVersion Include="Microsoft.Health.Fhir.Anonymizer.Stu3.Core" Version="3.1.0.90" />
     <PackageVersion Include="Microsoft.Health.Fhir.Liquid.Converter" Version="7.0.1" />
     <PackageVersion Include="Microsoft.Health.SqlServer.Api" Version="$(HealthcareSharedPackageVersion)" />
     <PackageVersion Include="Microsoft.Health.SqlServer" Version="$(HealthcareSharedPackageVersion)" />

src/Microsoft.Health.Fhir.Api/Microsoft.Health.Fhir.Api.csproj

@@ -14,7 +14,7 @@
   <ItemGroup>
     <PackageReference Include="Ensure.That" />
     <PackageReference Include="FluentValidation" />
-    <PackageReference Include="Hl7.Fhir.Serialization" />
+    <PackageReference Include="Hl7.Fhir.Base" />
     <PackageReference Include="MediatR" />
     <PackageReference Include="Microsoft.AspNetCore.Mvc.Razor.RuntimeCompilation" />
     <PackageReference Include="Microsoft.Extensions.FileProviders.Embedded" />