Awesome Mitochondria

Table of Contents

• Human genetics
• Ecological genetics
• Key papers

Human genetics

1. MitoWheel - visual toolset for exploring the human mitochondrial genome
2. MITOMAP - database of polymorphisms and mutations in human mitochondrial DNA
3. HaploGrep - haplogroup classification tool
4. AmtDB - ancient mtDNA database
5. Helix Mitochondrial database - The largest publicly available mitochondrial variant database
6. http://www.phylotree.org/index.htm

Ecological genetics

1. Nemu pipeline - pipeline to reconstruct mutational spectrum from genbank sequences
2. MIDORI2 - reference database of DNA and amino acid sequences used for taxonomic assignments of Eukaryota mitochondrial DNA sequences
3. MitoZoa - specialized database collecting mtDNA entries of metazoan species
4. MITOS2 - improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

Specific tools

1. MitoScape - big-data, machine-learning workflow for obtaining mtDNA sequence from NGS data.
2. MitoAalt - Accurate mapping of mitochondrial DNA deletions and duplications using deep sequencing
3. eKLIPse - a sensitive tool for the detection and quantification of mitochondrial DNA deletions from next-generation sequencing data
4. MitoHPC -

Key papers