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  1. RNA-FM RNA-FM Public

    RNA foundation model

    Jupyter Notebook 207 23

  2. e2efold e2efold Public

    pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

    Python 109 18

  3. Dense-Homolog-Retrieval Dense-Homolog-Retrieval Public

    Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

    Python 85 2

  4. RhoFold RhoFold Public

    RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach

    Python 31 7

  5. CLEAR CLEAR Public

    CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis

    Python 30 8

  6. RiboDiffusion RiboDiffusion Public

    ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

    Python 29 5

Repositories

Showing 10 of 11 repositories
  • RiboDiffusion Public

    ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

    ml4bio/RiboDiffusion’s past year of commit activity
    Python 29 MIT 5 0 0 Updated Nov 17, 2024
  • RhoDesign Public

    Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.

    ml4bio/RhoDesign’s past year of commit activity
    Jupyter Notebook 15 MIT 0 0 0 Updated Nov 8, 2024
  • CasAINet Public

    Accurate and explainable detection of Cas proteins via robust large language model and attentive network

    ml4bio/CasAINet’s past year of commit activity
    0 0 0 0 Updated Sep 6, 2024
  • Dense-Homolog-Retrieval Public

    Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

    ml4bio/Dense-Homolog-Retrieval’s past year of commit activity
    Python 85 BSD-3-Clause 2 2 0 Updated Aug 30, 2024
  • ifDEEPre Public

    large protein language-based deep learning enables interpretable and fast predictions of enzyme commission numbers

    ml4bio/ifDEEPre’s past year of commit activity
    Python 2 MIT 1 0 1 Updated Jul 24, 2024
  • USPNet Public

    Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model

    ml4bio/USPNet’s past year of commit activity
    Python 28 MIT 2 1 0 Updated Apr 15, 2024
  • e2efold Public

    pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

    ml4bio/e2efold’s past year of commit activity
    Python 109 MIT 18 8 0 Updated Apr 7, 2024
  • RNA-FM Public

    RNA foundation model

    ml4bio/RNA-FM’s past year of commit activity
    Jupyter Notebook 207 MIT 23 9 0 Updated Apr 1, 2024
  • RhoFold Public

    RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach

    ml4bio/RhoFold’s past year of commit activity
    Python 31 Apache-2.0 7 2 0 Updated Jan 29, 2024
  • E2Efold-3D Public

    End-to-End Deep Learning Method for accurate de novo RNA 3D Structure Prediction

    ml4bio/E2Efold-3D’s past year of commit activity
    3 0 1 0 Updated Jan 4, 2024
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