Code

Module:snppileup#24

Code

Merged

nikhil merged 39 commits intodevelopmskcc-omics-workflows/modules:developfrom feature/snppileupmskcc-omics-workflows/modules:feature/snppileupCopy head branch name to clipboardFeb 26, 2024

+565-11

Commits

Commits on Dec 19, 2023

• Add snppileup module

  nikhil

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  72efa75

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• Add test config files

  nikhil

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  c42f422

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Commits on Jan 2, 2024

• Fix test input

  nikhil

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  c7bb668

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• Reconfigure snp input

  nikhil

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  872392e

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• Fix stub test

  nikhil

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  8349d61

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Commits on Jan 4, 2024

• Some cleanup

  nikhil

  committed
  c0037e7

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• Use the proper config

  nikhil

  committed
  30c16a4

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• Add snap file for snppileup

  nikhil

  committed
  cbe3174

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Commits on Jan 12, 2024

• Merge branch 'develop' of github.com:mskcc-omics-workflows/modules into feature/snppileup

  nikhil

  committed
  5f46ddd

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• Ignore conda snppileup test

  nikhil

  committed
  bcfbf80

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• Fix formatting

  nikhil

  committed
  f364d55

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• Set meta to correct input and outputs

  nikhil

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  a3964ec

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• Add tag to snppileup test

  nikhil

  committed
  d0beab3

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• Fix meta to be more specific on files

  nikhil

  committed
  62c3db9

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• Fix testing tags

  nikhil

  committed
  62a350d

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• Update snppileup description

  nikhil

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  ccdd6f7

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• Add description of additional meta fields

  nikhil

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  64cc75d

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Commits on Jan 23, 2024

• Fix snppileup input channels

  nikhil

  committed
  4cf2bd5

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• Add dyanamic tool version detection

  nikhil

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  885ded6

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• Fix test files:

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  nikhil

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  6d83534

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• Add mskcc custom test bams and dbsnp

  nikhil

  committed
  9bc5708

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• Formatting fix

  nikhil

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  9bf89fc

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• Add snppileup snap file

  nikhil

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  9e37674

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Commits on Jan 29, 2024

• Update test repo links

  nikhil

  committed
  2111387

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• Update stub test to properly output gz files

  nikhil

  committed
  f99bfb2

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• Add stub test

  nikhil

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  5cbc524

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• Add snap file

  nikhil

  committed
  b572ff4

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• Merge branch 'develop' into feature/snppileup

  nikhil

  authored
  58eeddc

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Commits on Jan 30, 2024

• Fix config formatting

  nikhil

  committed
  4a3cb70

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• Merge branch 'feature/snppileup' of github.com:mskcc-omics-workflows/modules into feature/snppileup

  nikhil

  committed
  b37624f

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• Fix test data config

  nikhil

  committed
  d174456

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• Refactor test data structure

  nikhil

  committed
  b140e27

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• Fix snppileup test

  nikhil

  committed
  a465cff

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Commits on Jan 31, 2024

• Update meta.yml to remove extra meta field

  nikhil

  authored
  c75a808

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Commits on Feb 26, 2024

• Merge branch 'develop' of github.com:mskcc-omics-workflows/modules into HEAD

  nikhil

  committed
  fcc13c3

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• Add extra testing files

  nikhil

  committed
  158072d

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• Add optional parameter for extra bams

  nikhil

  committed
  176a9e7

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• Updated tests to work with and test the extra bam parameter

  nikhil

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  5ee88cc

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• Add updated snap file

  nikhil

  committed
  cfdde76

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