update taylorlab paths

mskcc · Jun 5, 2024 · cbc0b8f · cbc0b8f
1 parent e5df6ee
commit cbc0b8f
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/conf/juno.config b/conf/juno.config
@@ -9,7 +9,7 @@ process {
     time           = { 3.h * task.attempt }
     clusterOptions = ""
     scratch        = true
-    beforeScript   = "module load singularity/3.1.1; unset R_LIBS; catch_term () { echo 'caught USR2/TERM signal'; set +e; false; on_exit ; } ; trap catch_term USR2 TERM"
+    beforeScript   = "module load singularity/3.7.1; unset R_LIBS; catch_term () { echo 'caught USR2/TERM signal'; set +e; false; on_exit ; } ; trap catch_term USR2 TERM"
     errorStrategy  = { task.attempt <= 3 ? 'retry' : 'ignore' }
     maxRetries     = 3
 
@@ -46,9 +46,9 @@ params {
     max_cpus       = 24
     max_time       = "500.h"
     mem_per_core   = true
-    reference_base = "/juno/work/taylorlab/cmopipeline/forte/"
-    igenomes_base  = '/juno/work/taylorlab/cmopipeline/mskcc-igenomes/igenomes'
-    targets_base   = '/juno/work/taylorlab/cmopipeline/forte/'
+    reference_base = "/juno/work/ccs/cmopipeline/forte/"
+    igenomes_base  = '/juno/work/tempo/cmopipeline/mskcc-igenomes/igenomes'
+    targets_base   = '/juno/work/ccs/cmopipeline/forte/'
 }
 
 env {
@@ -59,5 +59,5 @@ singularity {
     enabled = true
     runOptions = "-B $TMPDIR"
     autoMounts = true
-    cacheDir = "/juno/work/taylorlab/cmopipeline/singularity_images/"
+    cacheDir = "/juno/work/tempo/cmopipeline/singularity_images/"
 }