bugfix invalid path value input

mskcc · Mar 4, 2024 · e634817 · e634817
1 parent be4e288
commit e634817
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/modules/local/metafusion/geneinfo/main.nf b/modules/local/metafusion/geneinfo/main.nf
@@ -8,7 +8,9 @@ process METAFUSION_GENEINFO {
         'ghcr.io/rocker-org/devcontainer/tidyverse:4' }"
 
     input:
-    tuple val(meta), path(gtf), path(starfusion_ref), path(fusioncatcher_ref)
+    tuple val(meta), path(gtf)
+    path(starfusion_ref)
+    path(fusioncatcher_ref)
 
     output:
     tuple val(meta), path("gene.info"), emit: metafusion_gene_info

diff --git a/subworkflows/local/prepare_references.nf b/subworkflows/local/prepare_references.nf
@@ -94,7 +94,7 @@ workflow PREPARE_REFERENCES {
     )
 
     METAFUSION_GENEINFO(
-        [[:],gtf, starfusion_ref,fusioncatcher_ref]
+        [[:],gtf], starfusion_ref,fusioncatcher_ref
     )
 
     AGFUSION_DOWNLOAD(