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Update gating #13

Merged
merged 4 commits into from
Jan 28, 2025
Merged

Update gating #13

merged 4 commits into from
Jan 28, 2025

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@hariszaf hariszaf commented Jan 28, 2025 •
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This PR aims to address #10 and #11

Stains are now independent and all of them optional. The meaning of a stain's threshold has been clarified.

User-specific labels are supported.
To this end, the GUI has been updated and a new argument (extra_strains) has been added in the CLI and in the config.yml file

extra_stains:
  stains:
    - stain:
      channel: FL4-H
      sign: greater_than
      value: 5
      label: kokla
  required: false

@hariszaf hariszaf merged commit d858f8f into msysbio:dev Jan 28, 2025
@hariszaf hariszaf mentioned this pull request Jan 30, 2025
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