# HyenaDNA Training Pipeline

A pipeline for training HyenaDNA models on genomic sequences using AWS SageMaker and HealthOmics.

## Setup
1. Install dependencies:
   ```bash
   pip install -r requirements.txt

2. Configure AWS credentials and region

3. Open the notebook in SageMaker Studio:

   • Navigate to notebooks/train_hyena_dna.ipynb
   • Follow the instructions in the notebook

Project Structure

• notebooks/: Contains the main training notebook
• scripts/: Helper modules for AWS sessions, data handling, and training
  • session_handler.py: AWS/SageMaker session management
  • data_handler.py: HealthOmics data access
  • training_handler.py: Training configuration and execution

Usage

See notebooks/train_hyena_dna.ipynb for detailed usage instructions.