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Align update of nextSIM-DG and XIOS calendars #301

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Align update of nextSIM-DG and XIOS calendars

Align update of nextSIM-DG and XIOS calendars #301

Workflow file for this run

.github/workflows/test_suite.yml at 28b2453
name: compile code and tests
on:
push:
branches: [ main, develop ]
pull_request:
branches: [ main, develop ]
jobs:
test-ubuntu-serial:
runs-on: ubuntu-22.04
container:
image: ghcr.io/nextsimhub/nextsimdg-dev-env:latest
steps:
- uses: actions/checkout@v2
- name: build and compile without XIOS or MPI
run: |
. /opt/spack-environment/activate.sh
mkdir -p build && cd build
cmake -DCMAKE_BUILD_TYPE=Release ..
make -j 4
- name: installs for python tests
run: |
pip install numpy
pip install netCDF4
- name: run serial tests
run: |
. /opt/spack-environment/activate.sh
apt update
apt install -y wget
cd build
(cd core/test && wget "ftp://ftp.nersc.no/nextsim/netCDF/partition_metadata_1.nc")
for component in core physics dynamics
do
cd $component/test
for file in $(find test* -maxdepth 0 -type f)
do
echo $file
./$file
done
cd -
done
mv ../test .
cd test
python3 ThermoIntegration_test.py
./run_test_jan2010_integration_test.sh python3
test-ubuntu-mpi-noxios:
runs-on: ubuntu-22.04
container:
image: ghcr.io/nextsimhub/nextsimdg-dev-env:latest
steps:
- uses: actions/checkout@v2
- name: build and compile with MPI but not XIOS
run: |
. /opt/spack-environment/activate.sh
mkdir -p build && cd build
cmake -DENABLE_MPI=ON -DENABLE_XIOS=OFF -DCMAKE_CXX_COMPILER="$(which mpic++)" ..
make -j 4
- name: run MPI tests
run: |
. /opt/spack-environment/activate.sh
apt update
apt install -y wget
cd build
(cd core/test && wget "ftp://ftp.nersc.no/nextsim/netCDF/partition_metadata_1.nc")
for component in core physics dynamics
do
cd $component/test
for file in $(find test* -maxdepth 0 -type f)
do
echo $file
nprocs=$(echo $file | sed -r "s/.*MPI([0-9]+)/\1/")
mpirun --allow-run-as-root --oversubscribe -n $nprocs ./$file
done
cd -
done
test-ubuntu-mpi-xios:
runs-on: ubuntu-22.04
container:
image: ghcr.io/nextsimhub/nextsimdg-dev-env:latest
steps:
- uses: actions/checkout@v2
- name: build and compile with XIOS and MPI
run: |
. /opt/spack-environment/activate.sh
mkdir -p build && cd build
cmake -DENABLE_MPI=ON -Dxios_DIR="/xios" -DENABLE_XIOS=ON -DCMAKE_CXX_COMPILER="$(which mpic++)" ..
make -j 4
- name: run MPI tests
run: |
. /opt/spack-environment/activate.sh
apt update
apt install -y wget
cd build
(cd core/test && wget "ftp://ftp.nersc.no/nextsim/netCDF/partition_metadata_1.nc")
for component in core physics dynamics
do
cd $component/test
for file in $(find test* -maxdepth 0 -type f)
do
echo $file
nprocs=$(echo $file | sed -r "s/.*MPI([0-9]+)/\1/")
mpirun --allow-run-as-root --oversubscribe -n $nprocs ./$file
done
cd -
done
test-mac-serial:
runs-on: macos-latest
steps:
- uses: actions/checkout@v2
- name: installs
run: |
brew install boost
brew unlink pkg-config
brew install pkgconf
brew link --overwrite pkgconf
brew install cmake
brew install eigen
brew install netcdf
brew install netcdf-cxx
pip install netCDF4
pip install numpy
# tmate can be used to get an interactive ssh session to the github runner
# for debugging actions. See
# [here](https://github.com/mxschmitt/action-tmate) for more information.
# uncomment these lines to debug mac build
# - name: Setup tmate session
# uses: mxschmitt/action-tmate@v3
- name: make
run: |
mkdir -p build
cd build
# added Python_ROOT_DIR to help cmake find correct Python in the mac VM
cmake -DCMAKE_BUILD_TYPE=Release -DENABLE_MPI=OFF -DENABLE_XIOS=OFF -DPython_ROOT_DIR=/Library/Frameworks/Python.framework/Versions/Current/bin ..
make -j 4
- name: run serial tests
run: |
cd build
for component in core physics dynamics
do
cd $component/test
for file in $(find test* -maxdepth 0 -type f | grep -v "_MPI\d*$")
do
echo $file
./$file
done
cd -
done
mv ../test .
cd test
python ThermoIntegration_test.py
./run_test_jan2010_integration_test.sh python