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Add examples for weighted sampling with multiple columns including month/week
documentation
Improvements or additions to documentation
#1645
opened Sep 25, 2024 by
victorlin
Augur index may always report sequence file is missing even if output dir is missing?
bug
Something isn't working
#1644
opened Sep 25, 2024 by
emmahodcroft
Also accept "region" as synonym of "source" for gb files?
enhancement
New feature or request
#1643
opened Sep 25, 2024 by
corneliusroemer
Add escape hatch for the "Augur version incompatibility detected" error
enhancement
New feature or request
#1635
opened Sep 21, 2024 by
corneliusroemer
augur merge
is slow to read in metadata
enhancement
#1628
opened Sep 10, 2024 by
tsibley
2 tasks
Release: changelog can be out-of-sync
bug
Something isn't working
#1620
opened Sep 3, 2024 by
victorlin
merge: Import metadata files concurrently?
enhancement
New feature or request
#1617
opened Sep 3, 2024 by
tsibley
Align fractional sequences per group conversion methods
proposal
Proposals that warrant further discussion
#1614
opened Aug 29, 2024 by
victorlin
Legacy editable installs are deprecated
bug
Something isn't working
#1611
opened Aug 28, 2024 by
genehack
filter: Prefer "output sequences" over "output"?
proposal
Proposals that warrant further discussion
#1607
opened Aug 27, 2024 by
victorlin
augur ancestral - IndexError when using wrong (shorter) reference
bug
Something isn't working
#1600
opened Aug 27, 2024 by
ammaraziz
Use identical help text for shared options
documentation
Improvements or additions to documentation
#1597
opened Aug 21, 2024 by
victorlin
filter: Make under-sampling more apparent
enhancement
New feature or request
#1590
opened Aug 20, 2024 by
victorlin
augur curate format-host
enhancement
New feature or request
#1586
opened Aug 20, 2024 by
joverlee521
CLI docs have incorrect default values for options using Something isn't working
documentation
Improvements or additions to documentation
store_false
action
bug
#1585
opened Aug 20, 2024 by
victorlin
Missing trait literals are converted to lower case in augur export stderr output
bug
Something isn't working
#1584
opened Aug 17, 2024 by
corneliusroemer
Update language around snakemake install
documentation
Improvements or additions to documentation
#1582
opened Aug 16, 2024 by
genehack
Uncaught error when root not in tree.
bug
Something isn't working
#1580
opened Aug 15, 2024 by
vanessazubach
parse-genbank-location
should warn about region/locality mix ups
enhancement
#1578
opened Aug 14, 2024 by
joverlee521
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Updated in the last three days: updated:>2024-09-26.