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Divergent branches on the mpox build
enhancement
New feature or request
#271
opened Aug 17, 2024 by
BryanTegomoh
Mpox Clade I delineation?
documentation
Improvements or additions to documentation
#265
opened Aug 8, 2024 by
woguta
[phylo] CI workflow DAG includes Something isn't working
update_example_data
bug
#237
opened Feb 13, 2024 by
joverlee521
fix_tree.py
can create invalid tree
bug
#232
opened Jan 22, 2024 by
joverlee521
Potentially include year-only sequences
enhancement
New feature or request
#231
opened Jan 21, 2024 by
corneliusroemer
Collection issue for things to bear in mind when moving a workflow to a folder
#202
opened Sep 27, 2023 by
corneliusroemer
Reverse complement reverse-complemented sequences in ingest to reduce downstream complications
enhancement
New feature or request
#192
opened Sep 22, 2023 by
corneliusroemer
It seems that there is no Chinese sequence included?
documentation
Improvements or additions to documentation
#160
opened Jul 9, 2023 by
Memorablea
Transmission Line Visualization Feature in Monkeypox Pipeline, Similar to the ncov Build
enhancement
New feature or request
#156
opened Jun 7, 2023 by
AroobAlhumaidy
Additionally produce Zstd compressed outputs in ingest
enhancement
New feature or request
#137
opened Nov 8, 2022 by
corneliusroemer
Add accession as tip label option -> easier for getting exclusion accessions quickly
enhancement
New feature or request
#132
opened Oct 16, 2022 by
corneliusroemer
Ingest: differentiate New feature or request
date_released
and date_submitted
enhancement
#104
opened Aug 18, 2022 by
joverlee521
Ingest: Add alignmentStart/End and/or sequence length to our metadata.tsv
enhancement
New feature or request
#99
opened Aug 2, 2022 by
corneliusroemer
Push aligned sequences up to data.nextstrain.org for download availability
enhancement
New feature or request
#96
opened Jul 25, 2022 by
emmahodcroft
ingest: Include more data from GenBank
enhancement
New feature or request
#68
opened Jun 17, 2022 by
chaoran-chen
Support for GISAID data
documentation
Improvements or additions to documentation
#63
opened Jun 16, 2022 by
huddlej
ingest: Split monolith transform rule
enhancement
New feature or request
#44
opened Jun 8, 2022 by
joverlee521
ingest: thread Slack notifications
enhancement
New feature or request
#36
opened Jun 7, 2022 by
joverlee521
ingest: deduplicate sequences using strain names
enhancement
New feature or request
#33
opened Jun 7, 2022 by
joverlee521
ingest: canonicalize strain names
enhancement
New feature or request
#32
opened Jun 7, 2022 by
joverlee521
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