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Fix stack overflow #371

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merged 2 commits into from
Nov 22, 2023
Merged

Fix stack overflow #371

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672467a
fixed "protection stack overflow" issue by setting max-ppsize
krokicki Nov 22, 2023
0bb54eb
update CHANGELOG
krokicki Nov 22, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [[#343](https://github.com/nf-core/chipseq/issues/343)] - Provide replicate information explicitly in samplesheet.
- Updated pipeline template to [nf-core/tools 2.10](https://github.com/nf-core/tools/releases/tag/2.10).
- [[#367](https://github.com/nf-core/chipseq/issues/367)] - Get rid of `CheckIfExists` for params paths.
- [[#370](https://github.com/nf-core/chipseq/issues/370)] - Fix stack overflow exceptions in phantompeakqualtools ([see here](https://github.com/kundajelab/phantompeakqualtools/issues/3)).

### Software dependencies

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1 change: 1 addition & 0 deletions conf/modules.config
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Expand Up @@ -418,6 +418,7 @@ process {
}

withName: 'PHANTOMPEAKQUALTOOLS' {
ext.args = { "--max-ppsize=500000" }
ext.args2 = { "-p=$task.cpus" }
publishDir = [
path: { "${params.outdir}/${params.aligner}/merged_library/phantompeakqualtools" },
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