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41 Open 169 Closed
41 Open 169 Closed
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Issues list

Provide custom script for merging MetaPhlAn tables for better sample name handling enhancement Improvement for existing functionality
#574 opened Jan 30, 2025 by alexhbnr
3
Suggestion: Maintain order of input to KRAKENUNIQ_PRELOADEDKRAKENUNIQ across runs bug Something isn't working enhancement Improvement for existing functionality
#570 opened Jan 20, 2025 by muniheart
7
Add option for BBTools Clumpify optical deduplication enhancement Improvement for existing functionality
#547 opened Oct 22, 2024 by funnell
1
Create a samplesheet for mag enhancement Improvement for existing functionality
#542 opened Oct 10, 2024 by sofstam
1
@sofstam
Create samplesheets for differentialabundance enhancement Improvement for existing functionality
#541 opened Oct 10, 2024 by LilyAnderssonLee
@LilyAnderssonLee
New feature: melon - long reads profiler enhancement Improvement for existing functionality
#517 opened Aug 30, 2024 by LilyAnderssonLee 1.3.0 - Crazy Corgi
@LilyAnderssonLee
Add the interactive visualisation tool GRIMER enhancement Improvement for existing functionality
#516 opened Aug 19, 2024 by LilyAnderssonLee 1.5.0 - Extravagant Estrela
Have checks that if sub-parameter activate but main parameter not, error or give warning enhancement Improvement for existing functionality
#513 opened Aug 8, 2024 by jfy133
Add support for metacache enhancement Improvement for existing functionality
#506 opened Jul 5, 2024 by ChillarAnand
Add CAT/BAT/RAT for long reads enhancement Improvement for existing functionality
#504 opened Jun 24, 2024 by LilyAnderssonLee
1
Add a long read classifier: lemur enhancement Improvement for existing functionality
#503 opened Jun 24, 2024 by LilyAnderssonLee
Add support for the sylph profiler enhancement Improvement for existing functionality
#497 opened Jun 14, 2024 by Midnighter
Merged tables not produced if not run with --run_profile_standardisation bug Something isn't working documentation Improvements or additions to documentation
#494 opened Jun 11, 2024 by apalleja
1
Add support Metabuli. enhancement Improvement for existing functionality
#492 opened May 31, 2024 by Joon-Klaps
Generate samplesheet for nf-core/mag enhancement Improvement for existing functionality
#449 opened Feb 15, 2024 by CarsonJM
4
Allow multiple bracken profiles with different -l levels from the same kraken2 report enhancement Improvement for existing functionality
#410 opened Oct 27, 2023 by MajoroMask 1.3.0 - Crazy Corgi
1
Allow hibf in ganon? enhancement Improvement for existing functionality
#401 opened Oct 11, 2023 by SannaAb 1.3.0 - Crazy Corgi
@jfy133 @sofstam
8
Simplify test profiles in CI test enhancement Improvement for existing functionality
#374 opened Sep 14, 2023 by LilyAnderssonLee 1.3.0 - Crazy Corgi
@jfy133 @LilyAnderssonLee
1
Add Eukdetect enhancement Improvement for existing functionality
#361 opened Sep 4, 2023 by maxibor
Profiling: consider cross-database merge for KMCP enhancement Improvement for existing functionality
#353 opened Aug 18, 2023 by jfy133 1.5.0 - Extravagant Estrela
Decontamination: add hostile for host removal enhancement Improvement for existing functionality
#346 opened Aug 8, 2023 by jfy133 1.5.0 - Extravagant Estrela
@LilyAnderssonLee
5
Ideas: more post-processing functionality enhancement Improvement for existing functionality question Further information is requested
#335 opened Jul 24, 2023 by jfy133
2
Add support for MMSeqs2 enhancement Improvement for existing functionality
#323 opened Jul 13, 2023 by jfy133 1.3.0 - Crazy Corgi
@sofstam
Consider switching host removal to graph based reference enhancement Improvement for existing functionality
#297 opened May 22, 2023 by jfy133
10
Taxpasta only accepts a single taxonomy although multiple could be present in database samplesheet bug Something isn't working enhancement Improvement for existing functionality
#293 opened May 11, 2023 by jfy133 1.3.0 - Crazy Corgi
3
ProTip! Adding no:label will show everything without a label.