Template: Fix GitHub Actions CI and Linting badges links #4441

# to view logs

	name: nf-core/tools dev API docs
	# Run on push and PR to test that docs build
	on:
	push:
	branches:
	- dev
	paths-ignore:
	- "CHANGELOG.md"
	pull_request:
	paths-ignore:
	- "CHANGELOG.md"
	release:
	types: [published]

	# Cancel if a newer run is started
	concurrency:
	group: ${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}
	cancel-in-progress: true

	jobs:
	api-docs:
	name: Build & push Sphinx API docs
	runs-on: ubuntu-latest

	steps:
	- name: Check out source-code repository
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4

	- name: Set up Python 3.11
	uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5
	with:
	python-version: 3.11

	- name: Install python dependencies
	run: \|
	pip install --upgrade pip
	pip install -r ./docs/api/requirements.txt
	pip install .

	- name: Build HTML docs
	run: make --directory ./docs/api html

	- name: Sync dev docs
	# Only sync with the website if it was a push from nf-core/tools dev branch
	if: github.repository == 'nf-core/tools' && github.event_name == 'push' && github.event.ref == 'refs/heads/dev'
	uses: SamKirkland/FTP-Deploy-Action@8a24039354ee91000cb948cb4a1dbdf1a1b94a3c # v4.3.4
	with:
	server: ${{ secrets.ftp_server }}
	username: ${{ secrets.ftp_username}}
	password: ${{ secrets.ftp_password }}
	local-dir: "./docs/api/_build/html/"
	server-dir: ${{ secrets.ftp_server_old_site_dir }}/dev/
	protocol: ${{ secrets.ftp_protocol }}
	port: ${{ secrets.ftp_port }}

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