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Joon-Klaps committed Oct 29, 2024
1 parent f2a4f6b commit 318ac2f
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Showing 2 changed files with 3 additions and 3 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ nextflow_function {
fastq_1: 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/sarscov2/illumina/fastq/test_1.fastq.gz',
fastq_2: '',
strandedness: 'auto']
]
])
input[1] = "$outputDir/test.csv"
input[2] = "csv"
"""
Expand Down Expand Up @@ -62,7 +62,7 @@ nextflow_function {
fastq_1: 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/sarscov2/illumina/fastq/test_1.fastq.gz',
fastq_2: '',
strandedness: 'auto']
]
])
input[1] = "$outputDir/test.tsv"
input[2] = "tsv"
"""
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2 changes: 1 addition & 1 deletion nf_core/pipelines/create/template_features.yml
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Expand Up @@ -281,7 +281,7 @@ modules:
custom_pipelines: True
downstream_samplesheet:
skippable_paths:
- "subworkflows/local/generate_downstream_samplesheets/"
- "subworkflows/local/generate_downstream_samplesheets"
short_description: "Include a subworkflow to generate downstream samplesheets"
description: "The pipeline will include the generate_downstream_samplesheets subworkflow for the generation of a samplesheet for other downstream pipelines."
help_text: |
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