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Fix number of arguments for pipelines_create within the command_create function #3074

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merged 7 commits into from
Jul 19, 2024
Merged

Fix number of arguments for pipelines_create within the command_create function #3074

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789a784
Fix number of arguments for pipelines_create
LaurenceKuhl Jul 17, 2024
2f66b48
[automated] Update CHANGELOG.md
nf-core-bot Jul 17, 2024
089bb67
Fix the command_create by putting the plain param again
LaurenceKuhl Jul 18, 2024
d4d3579
Merge branch 'issue-3068' of https://github.com/laurencekuhl/tools in…
LaurenceKuhl Jul 18, 2024
dcb1dc0
Automatically add a default version in pipelines_create
LaurenceKuhl Jul 18, 2024
9dc96b8
Add default version
LaurenceKuhl Jul 18, 2024
69d59a8
Update nf_core/__main__.py
LaurenceKuhl Jul 19, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -51,6 +51,7 @@
- Update to pytest v8 and move it to dev dependencies ([#3058](https://github.com/nf-core/tools/pull/3058))
- handle new jsonschema error type ([#3061](https://github.com/nf-core/tools/pull/3061))
- Update python:3.12-slim Docker digest to f11725a ([#3071](https://github.com/nf-core/tools/pull/3071))
- Fix number of arguments for pipelines_create within the command_create function ([#3074](https://github.com/nf-core/tools/pull/3074))

## [v2.14.1 - Tantalum Toad - Patch](https://github.com/nf-core/tools/releases/tag/2.14.1) - [2024-05-09]

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4 changes: 2 additions & 2 deletions nf_core/__main__.py
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Expand Up @@ -2169,7 +2169,7 @@ def command_lint(
)
@click.option("-d", "--description", type=str, help="A short description of your pipeline")
@click.option("-a", "--author", type=str, help="Name of the main author(s)")
@click.option("--version", type=str, help="The initial version number to use")
@click.option("--version", type=str, default="1.0.0dev", help="The initial version number to use")
@click.option("-f", "--force", is_flag=True, default=False, help="Overwrite output directory if it already exists")
@click.option("-o", "--outdir", help="Output directory for new pipeline (default: pipeline name)")
@click.option("-t", "--template-yaml", help="Pass a YAML file to customize the template")
Expand All @@ -2188,7 +2188,7 @@ def command_create(ctx, name, description, author, version, force, outdir, templ
log.warning(
"The `[magenta]nf-core create[/]` command is deprecated. Use `[magenta]nf-core pipelines create[/]` instead."
)
pipelines_create(ctx, name, description, author, version, force, outdir, template_yaml, plain, organisation)
pipelines_create(ctx, name, description, author, version, force, outdir, template_yaml, organisation)


# Main script is being run - launch the CLI
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