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More MRI study support #423

Merged
merged 5 commits into from
Apr 11, 2024
Merged

More MRI study support #423

merged 5 commits into from
Apr 11, 2024

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anngvu
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@anngvu anngvu commented Apr 11, 2024

Hoping to close #384. Previously added relevant brain regions and behavioral assays for the GABA MRI study. This adds a couple of file formats that were missed.

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PR Preview Action v1.4.7
🚀 Deployed preview to https://nf-osi.github.io/nf-metadata-dictionary/pr-preview/pr-423/
on branch gh-pages at 2024-04-11 23:10 UTC

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Test Suite Report

Template Generation

template result link
AnimalIndividualTemplate 😄 template link
BiospecimenTemplate 😄 template link
ClinicalAssayTemplate 😄 template link
EpigeneticsAssayTemplate 😄 template link
FlowCytometryTemplate 😄 template link
GenomicsAssayTemplate 😄 template link
GenomicsAssayTemplateExtended 😄 template link
HumanCohortTemplate
ImagingAssayTemplate 😄 template link
LightScatteringAssayTemplate 😄 template link
MethylationArrayTemplate 😄 template link
MRIAssayTemplate 😄 template link
PharmacokineticsAssayTemplate 😄 template link
PlateBasedReporterAssayTemplate 😄 template link
ProcessedAlignedReadsTemplate 😄 template link
ProcessedExpressionTemplate 😄 template link
ProcessedVariantCallsTemplate 😄 template link
ProteomicsAssayTemplate 😄 template link
ProtocolTemplate 😄 template link
RNASeqTemplate 😄 template link
ScRNASeqTemplate 😄 template link
UpdateMilestoneReport 😄 template link
WESTemplate 😄 template link
WGSTemplate 😄 template link

Manifest Validation

manifest result expectation
GenomicsAssayTemplate_0.csv 😄 Lists can be blank if attr not required using ‘list like’ rule
GenomicsAssayTemplate_1.csv 😄 Mixing blanks and regular list values works
GenomicsAssayTemplate_2.csv 😄 Conditional validation for attributes is currently not supported
ScRNASeqTemplate_0.csv 😄 Single list val works by using ‘list like’ rule
ScRNASeqTemplate_1.csv 😄 Fail because of missing data in required field libraryStrand

@anngvu anngvu merged commit caa6382 into main Apr 11, 2024
@anngvu anngvu deleted the patch/mri-study-support branch April 11, 2024 23:43
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Add terms for MRI/GABA study annotations
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