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TableInfo: file_describes_collection.tsv

abradyIGS edited this page Sep 3, 2021 · 9 revisions

If populated, file_describes_collection.tsv will contain one row for every file that describes an entire collection defined by your program.

All fields are required; this table can be empty (header-row only), but any non-header rows must have all fields populated

Some examples:

  • If you don't have any files that summarize entire collections, this table should be left empty.
  • If you have exactly one file describing each of your collections, this table will have the same number of rows as collection.tsv
  • If you have five files summarizing each collection, this table will have five times as many rows as collection.tsv
Field Field Description Required? Attributes Extra Info
file_id_namespace Identifier namespace for this file Required if table is populated If a row has this value, it must have a value for every column

Value type is string
For each row this will be the value of id_namespace in file.tsv for the file for this biosample. If your program has not implemented multiple id_namespaces, this will be exactly the same for all rows and in the collection_id_namespace column
file_local_id The ID of this file Required if table is populated If a row has this value, it must have a value for every column

Value type is string
For each row this will be the value of local_id in file.tsv for the file that describes this biosample. If a biosample has multiple files, it should have multiple rows. Concatenating values in this column will invalidate your submission
biosample_id_namespace Identifier namespace for this biosample Required if table is populated If a row has this value, it must have a value for every column

Value type is string
For each row this will be the value of id_namespace in biosample.tsv for the biosample associated with this file. If your program has not implemented multiple id_namespaces, this will be exactly the same for all rows and in the collection_id_namespace column
biosample_local_id The ID of this biosample Required if table is populated If a row has this value, it must have a value for every column

Value type is string
For each row this will be the value of local_id in biosample.tsv for the biosample associated with this file.
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