Tableinfo: phenotype_disease.tsv

This table must not be manually created. Users should skip this, and all other tables marked "Built by script" in this summary, preparing only the rest of their datapackage's TSV files (those marked "Prepared by submitter") for submission. Once the "Prepared by submitter" tables are ready, users should then use the C2M2 submission prep script to automatically generate this table (and the other "Built by script" tables) using the information in the "Prepared by submitter" tables.

Each row in this table is equivalent to the statement "phenotype X is known to be associated with disease Y", for one particular (phenotype X, disease Y) pair; contents are autoloaded from HPO by the submission prep script, which adds two sets of records (with any redundancies removed):

• one row for every disease term associated with every phenotype term used in collection_phenotype.tsv or subject_phenotype.tsv
• one row for every phenotype term associated with every disease term appearing in biosample_disease.tsv, collection_disease.tsv or subject_disease.tsv

All associations expressed in this table been predetermined by the curators of the Human Phenotype Ontology.

Field	Field Description	Required?	Field Value Type	Extra Info
phenotype	A valid Human Phenotype Ontology term	Required	string	Human Phenotype Ontology lookup Examples: HP:0000349, HP:0012425
disease	A valid Disease Ontology term	Required	string	Disease Ontology lookup Examples: DOID:8778, DOID:0060249