Merge branch 'master' of https://github.com/npnl/PALS

npnl · May 31, 2018 · 4f86244 · 4f86244
2 parents afd361c + 9151798
commit 4f86244
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Showing 3 changed files with 3 additions and 5 deletions.
diff --git a/README.md b/README.md
@@ -3,8 +3,6 @@
 
 Welcome to our github page!
 
-This page is under construction. Please use under your own discretion.
-
 ## What is PALS?
 
 PALS is a scalable and user-friendly toolbox designed to facilitate standardized analysis and ensure quality in stroke research using T1-weighted MRIs. The PALS toolbox offers four moduels integrated into a single pipeline, including (1) reorientation to radiological convention, (2) lesion correction for healthy white matter voxels, (3) lesion load calculation, and (4) visual quality control.

diff --git a/pages/running_operations.py b/pages/running_operations.py
@@ -105,7 +105,7 @@ def resetUI(self):
 		self.btn_next.config(state="disabled")
 		self.stop.config(state="disabled")
 		self.output.delete('1.0', END)
-		self.title.set('Press Start Execution')
+		self.title.set("Press 'Start Execution' to begin")
 		self.progressbar.config(value=0)
 		self.need_subjects_file = False
 		self.disableChildren(self.lf_subject_file.winfo_children())
@@ -131,7 +131,7 @@ def executeCommand(self):
 			except Exception as e:
 				self.controller.logger.error(e.message)
 				self.controller.logger.error(traceback.format_exc())
-				self.setRequiredInputError('Please import correct text file downloaded from the QC page.')
+				self.setRequiredInputError('Please import correct textfile downloaded from the QC page.')
 				return False
 
 		self.disableChildren(self.lf_subject_file.winfo_children())

diff --git a/utils/lesion_load_calculation_operation.py b/utils/lesion_load_calculation_operation.py
@@ -166,7 +166,7 @@ def _writeToCSV(self, subject_info_all, max_lesions, roi_list, space):
 			header.append('Lesion%s_Volume_StandardSpace'%(str(lesion_counter+1)))
 			for roi in roi_list:
 				roi_name = self._extractFileName(roi, remove_extension=True, extension_count=2)
-				header.append('Lesion%s_%s_Volume'%(str(lesion_counter+1), roi_name))
+				header.append('%s_Volume'%(roi_name))
 				header.append('Lesion%s_%s_lesionload'%(str(lesion_counter+1), roi_name))
 				header.append('Lesion%s_%s_PercentOverlap'%(str(lesion_counter+1),roi_name))