release 2020-06-19

obophenotype · Jun 19, 2020 · 06e98c5 · 06e98c5
1 parent 78f4a5f
commit 06e98c5
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Showing 44 changed files with 6,968 additions and 3,878 deletions.
diff --git a/ddpheno-base.json b/ddpheno-base.json
diff --git a/ddpheno-base.obo b/ddpheno-base.obo
diff --git a/ddpheno-base.owl b/ddpheno-base.owl
diff --git a/ddpheno-full.json b/ddpheno-full.json
diff --git a/ddpheno-full.obo b/ddpheno-full.obo
diff --git a/ddpheno-full.owl b/ddpheno-full.owl
diff --git a/ddpheno.json b/ddpheno.json
diff --git a/ddpheno.obo b/ddpheno.obo
diff --git a/ddpheno.owl b/ddpheno.owl
diff --git a/imports/ddanat_import.json b/imports/ddanat_import.json
@@ -716,14 +716,14 @@
       "sub" : "http://purl.obolibrary.org/obo/DDANAT_0000004",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/DDANAT_0010082"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/DDANAT_0010082",
-      "pred" : "is_a",
-      "obj" : "http://purl.obolibrary.org/obo/DDANAT_0010001"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/DDANAT_0000405",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/DDANAT_0000401"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/DDANAT_0010082",
+      "pred" : "is_a",
+      "obj" : "http://purl.obolibrary.org/obo/DDANAT_0010001"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/DDANAT_0000002",
       "pred" : "http://purl.obolibrary.org/obo/ddanat#part_of",
@@ -788,14 +788,14 @@
       "sub" : "http://purl.obolibrary.org/obo/DDANAT_0000403",
       "pred" : "http://purl.obolibrary.org/obo/ddanat#develops_from",
       "obj" : "http://purl.obolibrary.org/obo/DDANAT_0000402"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/DDANAT_0000006",
-      "pred" : "is_a",
-      "obj" : "http://purl.obolibrary.org/obo/DDANAT_0010082"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/DDANAT_0000012",
       "pred" : "http://purl.obolibrary.org/obo/ddanat#develops_from",
       "obj" : "http://purl.obolibrary.org/obo/DDANAT_0000011"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/DDANAT_0000006",
+      "pred" : "is_a",
+      "obj" : "http://purl.obolibrary.org/obo/DDANAT_0010082"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/DDANAT_0000405",
       "pred" : "http://purl.obolibrary.org/obo/ddanat#part_of",
@@ -978,7 +978,7 @@
       "subsets" : [ ],
       "xrefs" : [ ],
       "basicPropertyValues" : [ ],
-      "version" : "http://purl.obolibrary.org/obo/ddpheno/releases/2019-11-08/imports/ddanat_import.owl"
+      "version" : "http://purl.obolibrary.org/obo/ddpheno/releases/2020-06-19/imports/ddanat_import.owl"
     },
     "equivalentNodesSets" : [ ],
     "logicalDefinitionAxioms" : [ ],

diff --git a/imports/ddanat_import.obo b/imports/ddanat_import.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: ddpheno/releases/2019-11-08/imports/ddanat_import.owl
+data-version: ddpheno/releases/2020-06-19/imports/ddanat_import.owl
 ontology: ddpheno/imports/ddanat_import
 
 [Term]

diff --git a/imports/ddanat_import.owl b/imports/ddanat_import.owl
@@ -9,7 +9,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ddpheno/imports/ddanat_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ddpheno/releases/2019-11-08/imports/ddanat_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ddpheno/releases/2020-06-19/imports/ddanat_import.owl"/>
     </owl:Ontology>
 
 

diff --git a/imports/go_import.json b/imports/go_import.json
@@ -136,7 +136,7 @@
       "subsets" : [ ],
       "xrefs" : [ ],
       "basicPropertyValues" : [ ],
-      "version" : "http://purl.obolibrary.org/obo/ddpheno/releases/2019-11-08/imports/go_import.owl"
+      "version" : "http://purl.obolibrary.org/obo/ddpheno/releases/2020-06-19/imports/go_import.owl"
     },
     "equivalentNodesSets" : [ ],
     "logicalDefinitionAxioms" : [ ],

diff --git a/imports/go_import.obo b/imports/go_import.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: ddpheno/releases/2019-11-08/imports/go_import.owl
+data-version: ddpheno/releases/2020-06-19/imports/go_import.owl
 subsetdef: goslim_aspergillus ""
 subsetdef: goslim_candida ""
 subsetdef: goslim_chembl ""

diff --git a/imports/go_import.owl b/imports/go_import.owl
@@ -10,7 +10,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ddpheno/imports/go_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ddpheno/releases/2019-11-08/imports/go_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ddpheno/releases/2020-06-19/imports/go_import.owl"/>
     </owl:Ontology>
 
 

diff --git a/imports/iao_import.json b/imports/iao_import.json
@@ -277,10 +277,10 @@
         },
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
-          "val" : "PERSON: Bjoern Peters"
+          "val" : "PERSON: Melanie Courtot"
         }, {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
-          "val" : "PERSON: Melanie Courtot"
+          "val" : "PERSON: Bjoern Peters"
         }, {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
           "val" : "http://purl.obolibrary.org/obo/IAO_0000120"
@@ -965,14 +965,14 @@
       "sub" : "http://purl.obolibrary.org/obo/IAO_0000226",
       "pred" : "type",
       "obj" : "http://purl.obolibrary.org/obo/IAO_0000225"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/IAO_0000078",
-      "pred" : "is_a",
-      "obj" : "http://purl.obolibrary.org/obo/IAO_0000102"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/IAO_0000219",
       "pred" : "inverseOf",
       "obj" : "http://purl.obolibrary.org/obo/IAO_0000235"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/IAO_0000078",
+      "pred" : "is_a",
+      "obj" : "http://purl.obolibrary.org/obo/IAO_0000102"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/IAO_0000578",
       "pred" : "is_a",
@@ -1111,7 +1111,7 @@
       "subsets" : [ ],
       "xrefs" : [ ],
       "basicPropertyValues" : [ ],
-      "version" : "http://purl.obolibrary.org/obo/ddpheno/releases/2019-11-08/imports/iao_import.owl"
+      "version" : "http://purl.obolibrary.org/obo/ddpheno/releases/2020-06-19/imports/iao_import.owl"
     },
     "equivalentNodesSets" : [ ],
     "logicalDefinitionAxioms" : [ ],

diff --git a/imports/iao_import.obo b/imports/iao_import.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: ddpheno/releases/2019-11-08/imports/iao_import.owl
+data-version: ddpheno/releases/2020-06-19/imports/iao_import.owl
 ontology: ddpheno/imports/iao_import
 owl-axioms: Prefix(owl:=<http://www.w3.org/2002/07/owl#>)\nPrefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)\nPrefix(xml:=<http://www.w3.org/XML/1998/namespace>)\nPrefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)\nPrefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)\n\n\nOntology(\nDeclaration(Class(<http://purl.obolibrary.org/obo/IAO_0000078>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/IAO_0000225>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/IAO_0000409>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/IAO_0000578>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/IAO_0000579>))\nDeclaration(Class(<http://www.geneontology.org/formats/oboInOwl#Subset>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000051>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/IAO_0000219>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000002>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000103>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000120>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000121>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000122>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000123>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000124>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000125>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000224>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000226>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000227>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000228>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000229>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000410>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000420>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000421>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000423>))\nDeclaration(NamedIndividual(<http://purl.obolibrary.org/obo/IAO_0000428>))\n\n############################\n#   Object Properties\n############################\n\n# Object Property: <http://purl.obolibrary.org/obo/IAO_0000219> (denotes)\n\nAnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/IAO_0000219> \"\"@en)\n\n\n\n############################\n#   Classes\n############################\n\n# Class: <http://purl.obolibrary.org/obo/IAO_0000078> (curation status specification)\n\nEquivalentClasses(<http://purl.obolibrary.org/obo/IAO_0000078> ObjectOneOf(<http://purl.obolibrary.org/obo/IAO_0000002> <http://purl.obolibrary.org/obo/IAO_0000120> <http://purl.obolibrary.org/obo/IAO_0000121> <http://purl.obolibrary.org/obo/IAO_0000122> <http://purl.obolibrary.org/obo/IAO_0000123> <http://purl.obolibrary.org/obo/IAO_0000124> <http://purl.obolibrary.org/obo/IAO_0000125> <http://purl.obolibrary.org/obo/IAO_0000423> <http://purl.obolibrary.org/obo/IAO_0000428>))\n\n# Class: <http://purl.obolibrary.org/obo/IAO_0000225> (obsolescence reason specification)\n\nEquivalentClasses(<http://purl.obolibrary.org/obo/IAO_0000225> ObjectOneOf(<http://purl.obolibrary.org/obo/IAO_0000103> <http://purl.obolibrary.org/obo/IAO_0000226> <http://purl.obolibrary.org/obo/IAO_0000227> <http://purl.obolibrary.org/obo/IAO_0000228> <http://purl.obolibrary.org/obo/IAO_0000229>))\n\n# Class: <http://purl.obolibrary.org/obo/IAO_0000409> (denotator type)\n\nEquivalentClasses(<http://purl.obolibrary.org/obo/IAO_0000409> ObjectOneOf(<http://purl.obolibrary.org/obo/IAO_0000410> <http://purl.obolibrary.org/obo/IAO_0000420> <http://purl.obolibrary.org/obo/IAO_0000421>))\n\n# Class: <http://purl.obolibrary.org/obo/IAO_0000578> (centrally registered identifier)\n\nSubClassOf(<http://purl.obolibrary.org/obo/IAO_0000578> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/IAO_0000219> <http://purl.obolibrary.org/obo/IAO_0000579>)))\n\n# Class: <http://www.geneontology.org/formats/oboInOwl#Subset> (<http://www.geneontology.org/formats/oboInOwl#Subset>)\n\nEquivalentClasses(<http://www.geneontology.org/formats/oboInOwl#Subset> ObjectOneOf(<http://purl.obolibrary.org/obo/IAO_0000224>))\n\n\n############################\n#   Named Individuals\n############################\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000120> (metadata complete)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000121> (organizational term)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000122> (ready for release)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000123> (metadata incomplete)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000124> (uncurated)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000125> (pending final vetting)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000226> (placeholder removed)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000227> (terms merged)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000228> (term imported)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000229> (term split)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000423> (to be replaced with external ontology term)\n\n\n# Individual: <http://purl.obolibrary.org/obo/IAO_0000428> (requires discussion)\n\n\n\nDifferentIndividuals(<http://purl.obolibrary.org/obo/IAO_0000120> <http://purl.obolibrary.org/obo/IAO_0000121> <http://purl.obolibrary.org/obo/IAO_0000122> <http://purl.obolibrary.org/obo/IAO_0000123> <http://purl.obolibrary.org/obo/IAO_0000124> <http://purl.obolibrary.org/obo/IAO_0000125> <http://purl.obolibrary.org/obo/IAO_0000423> <http://purl.obolibrary.org/obo/IAO_0000428>)\nDifferentIndividuals(<http://purl.obolibrary.org/obo/IAO_0000226> <http://purl.obolibrary.org/obo/IAO_0000227> <http://purl.obolibrary.org/obo/IAO_0000228> <http://purl.obolibrary.org/obo/IAO_0000229>)\n)
 

diff --git a/imports/iao_import.owl b/imports/iao_import.owl
@@ -9,7 +9,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ddpheno/imports/iao_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ddpheno/releases/2019-11-08/imports/iao_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ddpheno/releases/2020-06-19/imports/iao_import.owl"/>
     </owl:Ontology>