Update release and pattern files

obophenotype · Aug 26, 2023 · b377b1d · b377b1d
1 parent 821673e
commit b377b1d
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Showing 17 changed files with 49,747 additions and 25,755 deletions.
diff --git a/ddpheno-base.json b/ddpheno-base.json
diff --git a/ddpheno-base.obo b/ddpheno-base.obo
diff --git a/ddpheno-base.owl b/ddpheno-base.owl
diff --git a/ddpheno-full.json b/ddpheno-full.json
diff --git a/ddpheno-full.obo b/ddpheno-full.obo
diff --git a/ddpheno-full.owl b/ddpheno-full.owl
diff --git a/ddpheno.json b/ddpheno.json
diff --git a/ddpheno.obo b/ddpheno.obo
diff --git a/ddpheno.owl b/ddpheno.owl
diff --git a/patterns/definitions.owl b/patterns/definitions.owl
diff --git a/patterns/pattern.owl b/patterns/pattern.owl
diff --git a/src/ontology/imports/ddanat_import.owl b/src/ontology/imports/ddanat_import.owl
diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl
diff --git a/src/ontology/imports/iao_import.owl b/src/ontology/imports/iao_import.owl
@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/ddpheno/imports/iao_import.owl>
-<http://purl.obolibrary.org/obo/ddpheno/releases/2023-02-19/imports/iao_import.owl>
+<http://purl.obolibrary.org/obo/ddpheno/releases/2023-08-26/imports/iao_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/iao/2022-11-07/iao.owl>)
-Annotation(owl:versionInfo "2023-02-19")
+Annotation(owl:versionInfo "2023-08-26")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))

diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl
diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
diff --git a/src/ontology/reports/ddpheno-edit.obo-obo-report.tsv b/src/ontology/reports/ddpheno-edit.obo-obo-report.tsv
@@ -1,5 +1,9 @@
 Level	Rule Name	Subject	Property	Value
-ERROR	deprecated_class_reference	DDPHENO:0000023	owl:equivalentClass	3f6d2f4d-510b-4725-baa4-4ec6be96879egenid171
+ERROR	deprecated_class_reference	obsolete abolished RNA interference	owl:equivalentClass	73dbf066-2dc8-427f-adc2-5265f0e52a39genid148
+ERROR	deprecated_class_reference	obsolete decreased resistance to mitomycin C	owl:equivalentClass	73dbf066-2dc8-427f-adc2-5265f0e52a39genid2406
+ERROR	deprecated_class_reference	DDPHENO:0001380	owl:equivalentClass	73dbf066-2dc8-427f-adc2-5265f0e52a39genid8008
+WARN	multiple_equivalent_classes	aberrant cell morphogenesis	owl:equivalentClass	blank node
 WARN	multiple_equivalent_classes	delayed prespore gene expression	owl:equivalentClass	blank node
-WARN	multiple_equivalent_classes	decreased number of vacuoles	owl:equivalentClass	blank node
+WARN	multiple_equivalent_classes	aberrant stream development	owl:equivalentClass	blank node
+WARN	multiple_equivalent_classes	decreased TORC2 signaling	owl:equivalentClass	blank node
 INFO	missing_superclass	Dicty Phenotypes	rdfs:subClassOf