Fix insertion with n consequence type #672
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4.12.5 introduced a bug where insertion variants > 50bp with N in the reference are classified as MNVs and therefore their consequeneTypes are miscalculated.
E.g of variant: 11:68410141:N:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGN
In this PR the conditions in VariantAnnotationUtils.getVariantType are changed so that such variants are classified as insertions so that the correct ConsequenceTypeCalculator gets assigned.