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Tárraga J., Arnau V., Martínez H., Moreno R., Cazorla D., Salavert-Torres J., Blanquer-Espert I., Dopazo J., Medina I. Acceleration of short and long DNA read mapping without loss of accuracy using suffix array. Bioinformatics. 2014 Aug 20. pii: btu553. [Epub ahead of print]
http://bioinformatics.oxfordjournals.org/content/early/2014/08/19/bioinformatics.btu553.long
Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí. A dynamic pipeline for RNA sequencing on multicore processors. Proceedings of the 20th European MPI Users' Group Meeting, 235-240, EuroMPI '13, 2013
http://dl.acm.org/citation.cfm?id=2488581
Torres J. S., Espert I. B., Dominguez A. T., Hernendez V., Medina I., Terraga J., Dopazo J.. 2012. Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform. IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB). 9(4)
http://www.ncbi.nlm.nih.gov/pubmed/22450827
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